ACHLI Acholeplasma laidlawii (strain PG-8A) Bacteria Genome Reviews 18-MAR-2008 (Rel. 88, Last updated, Version 2) CP000896_GR ACIAC Acidovorax avenae subsp. citrulli (strain AAC00-1) Bacteria EBI 05-JAN-2007 (Rel. 90, Last updated, Version 1) CP000512 ACIAD Acinetobacter sp. (strain ADP1) Bacteria EBI 17-APR-2005 (Rel. 83, Last updated, Version 5) CR543861 ACIBT Acinetobacter baumannii (strain ATCC 17978 / NCDC KC 755) Bacteria Genome Reviews 26-JUN-2007 (Rel. 76, Last updated, Version 3) CP000521_GR ACISJ Acidovorax sp. (strain JS42) Bacteria EBI 05-JAN-2007 (Rel. 90, Last updated, Version 1) CP000539 ACTP2 Actinobacillus pleuropneumoniae serotype 5b (strain L20) Bacteria Genome Reviews 26-JUN-2007 (Rel. 76, Last updated, Version 3) CP000569_GR ACTSZ Actinobacillus succinogenes (strain ATCC 55618 / 130Z) Bacteria Genome Reviews 26-FEB-2008 (Rel. 87, Last updated, Version 2) CP000746_GR AEDAE Aedes aegypti Eukaryota Ensembl AaegL1; Ensembl v42; 26-NOV-2006 ftp://ftp.ensembl.org/pub/current_aedes_aegypti/data/flatfiles/embl/ AERHH Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) Bacteria EBI 30-NOV-2006 (Rel. 89, Last updated, Version 3) CP000462 AERS4 Aeromonas salmonicida (strain A449) Bacteria Genome Reviews 26-JUN-2007 (Rel. 76, Last updated, Version 3) CP000644_GR AGRT5 Agrobacterium tumefaciens Bacteria NCBI NC_003062.1 GI:15887359; 03-NOV-2004 NC_003062 ALCBS Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) Bacteria Genome Reviews 03-OCT-2006 (Rel. 59, Last updated, Version 2) AM286690_GR ALHEH Alkalilimnicola ehrlichei (strain MLHE-1) Bacteria Genome Reviews 14-NOV-2006 (Rel. 62, Last updated, Version 1) CP000453_GR ALKMQ Alkaliphilus metalliredigens (strain QYMF) Bacteria Genome Reviews 05-FEB-2008 (Rel. 86, Last updated, Version 1) CP000724_GR ALKOO Alkaliphilus oremlandii (strain OhILAs) Bacteria Genome Reviews 05-FEB-2008 (Rel. 86, Last updated, Version 1) CP000853_GR ANADE Anaeromyxobacter dehalogenans (strain 2CP-C) Bacteria EBI 31-JAN-2006 (Rel. 86, Last updated, Version 2) CP000251 ANADF Anaeromyxobacter sp. (strain Fw109-5) Bacteria Genome Reviews 04-DEC-2007 (Rel. 84, Last updated, Version 3) CP000769_GR ANAMM Anaplasma marginale (strain St. Maries) Bacteria EBI 17-APR-2005 (Rel. 83, Last updated, Version 3) CP000030 ANAPZ Anaplasma phagocytophilum (strain HZ) Bacteria EBI 22-FEB-2006 (Rel. 86, Last updated, Version 1) CP000235 ANOGA Anopheles gambiae Eukaryota Ensembl Ensembl 46; AgamP3; 4-AUG-2007 ftp://ftp.ensembl.org/pub/current_anopheles_gambiae/data/flatfiles/embl/ APIME Apis mellifera Eukaryota Ensembl AMEL1.1; 21-FEB-2005 ftp://ftp.ensembl.org/pub/current_bee/data/flatfiles/embl/ ARCB4 Arcobacter butzleri (strain RM4018) Bacteria Genome Reviews 15-JAN-2008 (Rel. 85, Last updated, Version 2) CP000361_GR ASHGO Ashbya gossypii Eukaryota EBI 21-JUN-2005 (Rel. 84, Last updated, Version 4) AE016819 ASPFU Aspergillus fumigatus Eukaryota EBI 27-JUL-2005 (Rel. 84, Last updated, Version 2) CM000169 AYWBP Aster yellows witches'-broom phytoplasma (strain AYWB) Bacteria EBI 19-MAY-2006 (Rel. 87, Last updated, Version 2) CP000061 AZOC5 Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) Bacteria Genome Reviews 05-FEB-2008 (Rel. 86, Last updated, Version 1) AP009384_GR AZOSB Azoarcus sp. (strain BH72) Bacteria EBI 19-DEC-2006 (Rel. 90, Last updated, Version 1) AM406670 AZOSE Azoarcus sp. (strain EbN1) Bacteria EBI 17-APR-2005 (Rel. 83, Last updated, Version 5) CR555306 BACA2 Bacillus amyloliquefaciens (strain FZB42) Bacteria Genome Reviews 04-DEC-2007 (Rel. 84, Last updated, Version 2) CP000560_GR BACAH Bacillus thuringiensis (strain Al Hakam) Bacteria EBI 28-NOV-2006 (Rel. 89, Last updated, Version 1) CP000485 BACAN Bacillus anthracis Bacteria NCBI 10-JUL-2004 NC_007530 BACC1 Bacillus cereus (strain ATCC 10987) Bacteria NCBI NC_003909.8 GI:42779081 NC_003909 BACCN Bacillus cereus subsp. cytotoxis (strain NVH 391-98) Bacteria Genome Reviews 26-FEB-2008 (Rel. 87, Last updated, Version 2) CP000764_GR BACCR Bacillus cereus (strain ATCC 14579 / DSM 31) Bacteria NCBI NC_004722.1 GI:30018278 NC_004722 BACCZ Bacillus cereus (strain ZK) Bacteria NCBI NC_006274.1 GI:52140164 NC_006274 BACHD Bacillus halodurans Bacteria NCBI NC_002570.1 GI:15612563 NC_002570 BACHK Bacillus thuringiensis (subsp. konkukian) Bacteria NCBI NC_005957.1 GI:49476684 NC_005957 BACLD Bacillus licheniformis (strain DSM 13 / ATCC 14580) Bacteria EBI 17-APR-2005 (Rel. 83, Last updated, Version 4) CP000002 BACSK Bacillus clausii (strain KSM-K16) Bacteria EBI 16-APR-2005 (Rel. 83, Last updated, Version 4) AP006627 BACSU Bacillus subtilis Bacteria Genome Reviews 12-SEP-2005 (Rel. 35, Last updated, Version 40) AL009126_GR BACWK Bacillus weihenstephanensis (strain KBAB4) Bacteria Genome Reviews 01-JUL-2008 (Rel. 93, Last updated, Version 2) CP000903_GR BARBK Bartonella bacilliformis (strain ATCC 35685 / KC583) Bacteria Genome Reviews 20-MAR-2007 (Rel. 70, Last updated, Version 2) CP000524_GR BARHE Bartonella henselae Bacteria NCBI NC_005956.1 GI:49474831 NC_005956 BARQU Bartonella quintana Bacteria NCBI NC_005955.1 GI:49473688 NC_005955 BAUCH Baumannia cicadellinicola (subsp. Homalodisca coagulata) Bacteria EBI 29-APR-2006 (Rel. 87, Last updated, Version 1) CP000238 BDEBA Bdellovibrio bacteriovorus Bacteria NCBI NC_005363.1 GI:42521650 NC_005363 BLOFL Candidatus Blochmannia floridanus Bacteria NCBI NC_005061.1 GI:33519483 NC_005061 BLOPB Blochmannia pennsylvanicus (strain BPEN) Bacteria EBI 05-AUG-2005 (Rel. 84, Last updated, Version 1) CP000016 BORA1 Bordetella avium (strain 197N) Bacteria EBI 08-FEB-2006 (Rel. 86, Last updated, Version 2) AM167904 BORAP Borrelia afzelii (strain PKo) Bacteria Genome Reviews 14-NOV-2006 (Rel. 62, Last updated, Version 2) CP000395_GR BORBR Bordetella bronchiseptica Bacteria NCBI NC_002927.3 GI:33598993 NC_002927 BORBU Borrelia burgdorferi Bacteria NCBI NC_001318.1 GI:15594346 BBUR BORGA Borrelia garinii Bacteria Genome Reviews 17-APR-2007 (Rel. 72, Last updated, Version 56) CP000013_GR BORPA Bordetella parapertussis Bacteria NCBI NC_002928.3 GI:33594723 NC_002928 BORPD Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) Bacteria Genome Reviews 29-APR-2008 (Rel. 90, Last updated, Version 1) AM902716_GR BORPE Bordetella pertussis Bacteria NCBI NC_002929.2 GI:33591275 NC_002929 BOTCI Botrytis cinerea Eukaryota BROAD Institute Release 1.0 http://www.broad.mit.edu/annotation/genome/botrytis_cinerea/Downloads.html BOTFB Botrytis cinerea Eukaryota BROAD Institute Release 1.0 http://www.broad.mit.edu/annotation/genome/botrytis_cinerea/Downloads.html BOVIN Bos taurus Eukaryota Ensembl Ensembl 43; Btau_3.1; 14-FEB-2007 ftp://ftp.ensembl.org/pub/current_bos_taurus/data/flatfiles/embl/ BRAJA Bradyrhizobium japonicum Bacteria EBI 17-SEP-2003 (Rel. 77, Last updated, Version 7) http://www.ebi.ac.uk/genomes/BA000040.html BRASB Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) Bacteria Genome Reviews 10-JUL-2007 (Rel. 77, Last updated, Version 2) CP000494_GR BRASO Bradyrhizobium sp. (strain ORS278) Bacteria Genome Reviews 26-JUN-2007 (Rel. 76, Last updated, Version 1) CU234118_GR BRUA2 Brucella abortus (strain 2308) Bacteria EBI 22-NOV-2005 (Rel. 85, Last updated, Version 1) AM040264 BRUAB Brucella abortus Bacteria EBI 06-APR-2005 (Rel. 83, Last updated, Version 1) AE017223 BRUME Brucella melitensis Bacteria Genome Reviews 11-SEP-2007 (Rel. 80, Last updated, Version 81) AE008917_GR BRUO2 Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) Bacteria Genome Reviews 11-SEP-2007 (Rel. 80, Last updated, Version 2) CP000708_GR BRUSI Brucella suis (strain ATCC 23445 / NCTC 10510) Bacteria EBI 02-JAN-2008 (Rel. 94, Last updated, Version 1) CP000911 BRUSU Brucella suis Bacteria NCBI NC_004310.1 GI:23500916 NC_004310 BUCAI Buchnera aphidicola (subsp. Acyrthosiphon pisum) Bacteria NCBI NC_002528.1 GI:15616630 NC_002528 BUCAP Buchnera aphidicola (subsp. Schizaphis graminum) Bacteria NCBI NC_004061.1 GI:21672294 NC_004061 BUCBP Buchnera aphidicola (subsp. Baizongia pistaciae) Bacteria NCBI NC_004545.1 GI:27904513 NC_004545 BUCCC Buchnera aphidicola subsp. Cinara cedri Bacteria EBI 20-OCT-2006 (Rel. 89, Last updated, Version 1) CP000263 BURCA Burkholderia cenocepacia (strain AU 1054) Bacteria Genome Reviews 13-NOV-2007 (Rel. 83, Last updated, Version 23) CP000378_GR BURCH Burkholderia cenocepacia (strain HI2424) Bacteria EBI 03-NOV-2006 (Rel. 89, Last updated, Version 1) CP000458 BURCM Burkholderia cepacia (strain ATCC 53795 / AMMD) Bacteria EBI 22-SEP-2006 (Rel. 89, Last updated, Version 1) CP000440 BURM7 Burkholderia mallei (strain NCTC 10247) Bacteria Genome Reviews 23-OCT-2007 (Rel. 82, Last updated, Version 2) CP000548_GR BURMA Burkholderia mallei Bacteria Genome Reviews 11-SEP-2007 (Rel. 80, Last updated, Version 63) CP000010_GR BURP0 Burkholderia pseudomallei (strain 1106a) Bacteria Genome Reviews 26-JUN-2007 (Rel. 76, Last updated, Version 1) CP000572_GR BURP1 Burkholderia pseudomallei (strain 1710b) Bacteria EBI 03-OCT-2005 (Rel. 85, Last updated, Version 1) CP000124 BURP6 Burkholderia pseudomallei (strain 668) Bacteria Genome Reviews 15-JAN-2008 (Rel. 85, Last updated, Version 5) CP000570_GR BURPS Burkholderia pseudomallei Bacteria NCBI NC_006350.1 GI:53717639 NC_006350 BURS3 Burkholderia sp. (strain 383) Bacteria EBI 21-OCT-2005 (Rel. 85, Last updated, Version 1) CP000151 BURTA Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) Bacteria EBI 06-JAN-2006 (Rel. 86, Last updated, Version 3) CP000086 BURVG Burkholderia vietnamiensis (strain G4 / LMG 22486) Bacteria Genome Reviews 23-OCT-2007 (Rel. 82, Last updated, Version 2) CP000614_GR BURXL Burkholderia xenovorans (strain LB400) Bacteria Genome Reviews 04-DEC-2007 (Rel. 84, Last updated, Version 24) CP000270_GR CAEBR Caenorhabditis briggsae Eukaryota WormBase WS180; build CB3 http://www.wormbase.org/biomart/martview/ CAEEL Caenorhabditis elegans Eukaryota Ensembl Ensembl 46; WS170; 4-AUG-2007 ftp://ftp.ensembl.org/pub/current_caenorhabditis_elegans/data/flatfiles/embl/ CAERE Caenorhabditis remanei Eukaryota WormBase preliminary PCAP assembly; 8/20/2005 ftp://ftp.wormbase.org/pub/wormbase/genomes/remanei/preliminary_analysis/ CAMC1 Campylobacter concisus (strain 13826) Bacteria Genome Reviews 05-FEB-2008 (Rel. 86, Last updated, Version 2) CP000792_GR CAMC5 Campylobacter curvus (strain 525.92) Bacteria Genome Reviews 05-FEB-2008 (Rel. 86, Last updated, Version 2) CP000767_GR CAMFF Campylobacter fetus subsp. fetus (strain 82-40) Bacteria EBI 02-DEC-2006 (Rel. 90, Last updated, Version 2) CP000487 CAMJ8 Campylobacter jejuni subsp. jejuni serotype O:6 (strain 81116 / NCTC 11828) Bacteria Genome Reviews 05-FEB-2008 (Rel. 86, Last updated, Version 2) CP000814_GR CAMJD Campylobacter jejuni subsp. doylei (strain ATCC BAA-1458 / RM4099 / 269.97) Bacteria Genome Reviews 05-FEB-2008 (Rel. 86, Last updated, Version 2) CP000768_GR CAMJE Campylobacter jejuni Bacteria NCBI AL111168 CAMJJ Campylobacter jejuni subsp. jejuni serotype O:23/36 (strain 81-176) Bacteria EBI 10-JAN-2007 (Rel. 90, Last updated, Version 1) CP000538 CAMJR Campylobacter jejuni (strain RM1221) Bacteria EBI 17-APR-2005 (Rel. 83, Last updated, Version 2) CP000025 CANAL Candida albicans Eukaryota GenoList Mon Jul 11 2002 http://genolist.pasteur.fr/CandidaDB/ CANFA Canis familiaris Eukaryota Ensembl BROADD2; 27-NOV-2006; Ensembl v42 ftp://ftp.ensembl.org/pub/current_dog/data/flatfiles/embl/ CANGA Candida glabrata Eukaryota EBI 30-JUL-2004 (Rel. 80, Last updated, Version 3) CR380947 CARHZ Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) Bacteria EBI 22-OCT-2005 (Rel. 85, Last updated, Version 1) CP000141 CARRP Carsonella ruddii (strain PV) Bacteria Genome Reviews 03-APR-2007 (Rel. 71, Last updated, Version 1) AP009180_GR CAUCR Caulobacter vibrioides Bacteria NCBI AE005673 AE005673 CAVPO Cavia porcellus Eukaryota Ensembl Ensembl 45; cavPor2; 24-MAY-2007 ftp://ftp.ensembl.org/pub/current_cavia_porcellus/flatfiles/embl/ CHICK Gallus gallus Eukaryota Ensembl WASHUC2; 28-NOV-2006 ftp://ftp.ensembl.org/pub/current_gallus_gallus/data/flatfiles/embl/ CHRSD Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) Bacteria EBI 20-MAY-2006 (Rel. 87, Last updated, Version 3) CP000285 CHRVO Chromobacterium violaceum Bacteria NCBI NC_005085.1 GI:34495455 NC_005085 CIOSA Ciona savignyi Eukaryota Ensembl CSAV2.0; Ensembl v29; 31-MAY-2006 ftp://ftp.ensembl.org/pub/current_ciona_savignyi/data/flatfiles/embl/ CLOAB Clostridium acetobutylicum Bacteria NCBI NC_003030.1 GI:15893298 NC_003030 CLOB1 Clostridium botulinum (strain ATCC 19397 / Type A) Bacteria Genome Reviews 23-OCT-2007 (Rel. 82, Last updated, Version 2) CP000726_GR CLOB8 Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) Bacteria Genome Reviews 18-MAR-2008 (Rel. 88, Last updated, Version 2) CP000721_GR CLOBH Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A) Bacteria Genome Reviews 23-OCT-2007 (Rel. 82, Last updated, Version 2) AM412317_GR CLOBK Clostridium botulinum (strain Okra / Type B1) Bacteria Genome Reviews 01-JUL-2008 (Rel. 93, Last updated, Version 3) CP000939_GR CLOD6 Clostridium difficile (strain 630) Bacteria EBI 20-SEP-2006 (Rel. 89, Last updated, Version 3) AM180355 CLOK5 Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) Bacteria Genome Reviews 18-MAR-2008 (Rel. 88, Last updated, Version 2) CP000673_GR CLONN Clostridium novyi (strain NT) Bacteria EBI 30-NOV-2006 (Rel. 89, Last updated, Version 2) CP000382 CLOP1 Clostridium perfringens (strain ATCC 13124 / NCTC 8237) Bacteria EBI 03-AUG-2006 (Rel. 88, Last updated, Version 2) CP000246 CLOPE Clostridium perfringens Bacteria NCBI NC_003366.1 GI:18308982 NC_003366 CLOPH Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) Bacteria Genome Reviews 18-MAR-2008 (Rel. 88, Last updated, Version 2) CP000885_GR CLOPS Clostridium perfringens (strain SM101) Bacteria EBI 03-AUG-2006 (Rel. 88, Last updated, Version 2) CP000312 CLOTE Clostridium tetani Bacteria NCBI NC_004557.1 GI:28209834 NC_004557 CLOTH Clostridium thermocellum (strain ATCC 27405 / DSM 1237) Bacteria Genome Reviews 17-APR-2007 (Rel. 72, Last updated, Version 2) CP000568_GR COLP3 Colwellia psychrerythraea (strain 34H / ATCC BAA-681) Bacteria EBI 04-AUG-2005 (Rel. 84, Last updated, Version 2) CP000083 COXBU Coxiella burnetii Bacteria NCBI NC_002971.2 GI:29732244 NC_002971 CRYNE Cryptococcus neoformans Eukaryota EBI 15-FEB-2005 (Rel. 82, Last updated, Version 3) http://www.ebi.ac.uk/genomes/eukaryota.html DANRE Danio rerio Eukaryota Ensembl Zv7; Ensembl v46; 4-AUG-2007 ftp://ftp.ensembl.org/pub/current_zebrafish/data/flatfiles/embl/ DAPPU Daphnia pulex Eukaryota JGI Frozen gene catalog, version 1.1 http://genome.jgi-psf.org/Dappu1/Dappu1.download.ftp.html DASNO Dasypus novemcinctus Eukaryota Ensembl Ensembl v40; ARMA; 27-JUL-2006 ftp://ftp.ensembl.org/pub/current_dasypus_novemcinctus/data/flatfiles/embl/ DEBHA Debaryomyces hansenii Eukaryota NCBI CR382133.1 GI:49651994 CR382133 DECAR Dechloromonas aromatica (strain RCB) Bacteria EBI 06-AUG-2005 (Rel. 84, Last updated, Version 1) CP000089 DESDG Desulfovibrio desulfuricans (strain G20) Bacteria EBI 29-OCT-2005 (Rel. 85, Last updated, Version 1) CP000112 DESHY Desulfitobacterium hafniense (strain Y51) Bacteria EBI 28-JUN-2006 (Rel. 88, Last updated, Version 2) AP008230 DESPS Desulfotalea psychrophila Bacteria NCBI NC_006138.1 GI:51243852 NC_006138 DESVH Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) Bacteria NCBI NC_002937.3 GI:46562128 NC_002937 DESVV Desulfovibrio vulgaris subsp. vulgaris (strain DP4) Bacteria Genome Reviews 17-APR-2007 (Rel. 72, Last updated, Version 3) CP000527_GR DICNV Dichelobacter nodosus (strain VCS1703A) Bacteria Genome Reviews 10-JUL-2007 (Rel. 77, Last updated, Version 2) CP000513_GR DROME Drosophila melanogaster Eukaryota Ensembl Ensembl 46; BDGP 4.3; 5-AUG-2007 ftp://ftp.ensembl.org/pub/current_drosophila_melanogaster/data/flatfiles/embl/ DROPS Drosophila pseudoobscura Eukaryota Flybase Release 2.0; 11-Nov-05 ftp://flybase.net/genomes/Drosophila_pseudoobscura/current/fasta/ ECHTE Echinops telfairi Eukaryota Ensembl Ensembl 40; TENREC; 27-JUL-2006 ftp://ftp.ensembl.org/pub/current_echinops_telfairi/data/flatfiles/embl/ ECO24 Escherichia coli O139:H28 (strain E24377A / ETEC) Bacteria Genome Reviews 05-FEB-2008 (Rel. 86, Last updated, Version 2) CP000800_GR ECO57 Escherichia coli O157:H7 Bacteria NCBI NC_002655.2 GI:16445223 NC_002655 ECODH Escherichia coli (strain DH10B) Bacteria Genome Reviews 01-JUL-2008 (Rel. 93, Last updated, Version 2) CP000948_GR ECOK1 Escherichia coli O1:K1 / APEC Bacteria EBI 05-OCT-2006 (Rel. 89, Last updated, Version 1) CP000468 ECOL5 Escherichia coli O6:K15:H31 (strain 536) Bacteria EBI 14-JUL-2006 (Rel. 88, Last updated, Version 1) CP000247 ECOL6 Escherichia coli O6 Bacteria Genome Reviews 17-APR-2007 (Rel. 72, Last updated, Version 74) AE014075_GR ECOLI Escherichia coli Bacteria NCBI NC_000913.2 GI:49175990 NC_000913 ECOUT Escherichia coli (strain UTI89 / UPEC) Bacteria EBI 19-APR-2006 (Rel. 87, Last updated, Version 2) CP000243 EHRCJ Ehrlichia canis (strain Jake) Bacteria EBI 23-AUG-2005 (Rel. 84, Last updated, Version 2) CP000107 EHRCR Ehrlichia chaffeensis (strain Arkansas) Bacteria EBI 23-FEB-2006 (Rel. 86, Last updated, Version 1) CP000236 EHRRG Ehrlichia ruminantium (strain Gardel) Bacteria EBI 17-APR-2005 (Rel. 83, Last updated, Version 3) CR925677 EHRRW Ehrlichia ruminantium (strain Welgevonden) Bacteria EBI 17-APR-2005 (Rel. 83, Last updated, Version 3) CR925678 ENCCU Encephalitozoon cuniculi Eukaryota NCBI CNS06C8G 209982 bp DNA linear INV 05-MAR-2002 CNS07EGH ENT38 Enterobacter sp. (strain 638) Bacteria Genome Reviews 05-FEB-2008 (Rel. 86, Last updated, Version 2) CP000653_GR ENTFA Enterococcus faecalis Bacteria NCBI NC_004668.1; GI:29374661 NC_004668 ERIEU Erinaceus europaeus Eukaryota Ensembl Ensembl 43; eriEur1; 20-FEB-2007 ftp://ftp.ensembl.org/pub/current_/daticeus_europaeus/flatfiles/embl/ ERWCT Erwinia carotovora (subsp. atroseptica) Bacteria NCBI NC_004547.2 GI:50118965 NC_004547 ERYLH Erythrobacter litoralis (strain HTCC2594) Bacteria EBI 12-JAN-2006 (Rel. 86, Last updated, Version 1) CP000157 EXIS2 Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 255-15) Bacteria Genome Reviews 01-JUL-2008 (Rel. 93, Last updated, Version 2) CP001022_GR FELCA Felis catus Eukaryota Ensembl CAT; Ensembl 43; 21-FEB-2007 ftp://ftp.ensembl.org/pub/current_aedes_aegypti/data/flatfiles/embl/ FRAT1 Mycobacteriophage FRAT1 Bacteria EBI 12-JUL-2006 (Rel. 88, Last updated, Version 1) AM286280 FRATF Francisella tularensis subsp. holarctica (strain FTA) Bacteria Genome Reviews 04-DEC-2007 (Rel. 84, Last updated, Version 2) CP000803_GR FRATH Francisella tularensis subsp. holarctica (strain LVS) Bacteria EBI 02-MAR-2006 (Rel. 87, Last updated, Version 1) AM233362 FRATN Francisella tularensis subsp. novicida (strain U112) Bacteria EBI 30-NOV-2006 (Rel. 89, Last updated, Version 1) CP000439 FRATO Francisella tularensis subsp. holarctica (strain OSU18) Bacteria Genome Reviews 14-NOV-2006 (Rel. 62, Last updated, Version 1) CP000437_GR FRATT Francisella tularensis (subsp. tularensis) Bacteria EBI 15-APR-2005 (Rel. 83, Last updated, Version 5) AJ749949 FRATW Francisella tularensis subsp. tularensis (strain WY96-3418) Bacteria Genome Reviews 26-JUN-2007 (Rel. 76, Last updated, Version 3) CP000608_GR FUGRU Takifugu rubripes Eukaryota Ensembl FUGU 4.0; Ensembl 49; 21-FEB-2008 ftp://ftp.ensembl.org/pub/current_embl/takifugu_rubripes/ GASAC Gasterosteus aculeatus Eukaryota Ensembl BROADS1; Ensembl 41; 25-SEP-2006 ftp://ftp.ensembl.org/pub/current_gasterosteus_aculeatus/data/flatfiles/embl/ GEOKA Geobacillus kaustophilus Bacteria EBI BA000043.1; 06-DEC-2004 (Rel. 82, Last updated, Version 1) BA000043 GEOMG Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) Bacteria EBI 28-OCT-2005 (Rel. 85, Last updated, Version 1) CP000148 GEOSL Geobacter sulfurreducens Bacteria NCBI NC_002939 3814139 bp DNA circular BCT 28-MAY-2004 NC_002939 GEOTN Geobacillus thermodenitrificans (strain NG80-2) Bacteria Genome Reviews 26-JUN-2007 (Rel. 76, Last updated, Version 2) CP000557_GR GEOUR Geobacter uraniumreducens (strain Rf4) Bacteria Genome Reviews 18-MAR-2008 (Rel. 88, Last updated, Version 2) CP000698_GR GLUDA Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) Bacteria Genome Reviews 18-MAR-2008 (Rel. 88, Last updated, Version 1) AM889285_GR GLUOX Gluconobacter oxydans Bacteria EBI 17-APR-2005 (Rel. 83, Last updated, Version 3) CP000009 GRABC Granulobacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) Bacteria Genome Reviews 14-NOV-2006 (Rel. 62, Last updated, Version 1) CP000394_GR HAEDU Haemophilus ducreyi Bacteria NCBI NC_002940.2 GI:33151282 NC_002940 HAEI8 Haemophilus influenzae (strain 86-028NP) Bacteria EBI 14-JUL-2005 (Rel. 84, Last updated, Version 2) CP000057 HAEIE Haemophilus influenzae (strain PittEE) Bacteria Genome Reviews 11-SEP-2007 (Rel. 80, Last updated, Version 2) CP000671_GR HAEIG Haemophilus influenzae (strain PittGG) Bacteria Genome Reviews 11-SEP-2007 (Rel. 80, Last updated, Version 2) CP000672_GR HAEIN Haemophilus influenzae Bacteria EBI Haemophilus influenzae Rd KW20 complete genome. #ftp://ftp.ebi.ac.uk/pub/databases/embl/genomes/Bacteria/hinfluenzae HAES1 Haemophilus somnus (strain 129PT) Bacteria Genome Reviews 14-NOV-2006 (Rel. 62, Last updated, Version 1) CP000436_GR HAHCH Hahella chejuensis (strain KCTC 2396) Bacteria EBI 15-DEC-2005 (Rel. 86, Last updated, Version 1) CP000155 HALHL Halorhodospira halophila (strain DSM 244 / SL1) Bacteria Genome Reviews 20-MAR-2007 (Rel. 70, Last updated, Version 2) CP000544_GR HELAH Helicobacter acinonychis (strain Sheeba) Bacteria EBI 14-NOV-2006 (Rel. 89, Last updated, Version 4) AM260522 HELHP Helicobacter hepaticus Bacteria NCBI NC_004917.1 GI:32265499 NC_004917 HELPH Helicobacter pylori (strain HPAG1) Bacteria EBI 01-JUL-2006 (Rel. 88, Last updated, Version 2) CP000241 HELPJ Helicobacter pylori J99 Bacteria Genome Reviews 04-JUL-2005 (Rel. 30, Last updated, Version 35) AE001439_GR HELPY Helicobacter pylori Bacteria NCBI NC_000915.1 GI:15644634 NC_000915 HELRO Helobdella robusta Eukaryota JGI Version 1.0 http://genome.jgi-psf.org/Helro1/Helro1.download.ftp.html HERAR Herminiimonas arsenicoxydans Bacteria Genome Reviews 10-JUL-2007 (Rel. 77, Last updated, Version 1) CU207211_GR HORSE Equus caballus Eukaryota Ensembl Ensembl v49; EquCab2; 23-FEB-2008 ftp://ftp.ensembl.org/pub/current_embl/equus_caballus/ HUMAN Homo sapiens Eukaryota Ensembl NCBI36; Ensembl 41; 5-OCT-2006 ftp://ftp.ensembl.org/pub/current_human/data/flatfiles/embl/ HYPNA Hyphomonas neptunium (strain ATCC 15444) Bacteria Genome Reviews 14-NOV-2006 (Rel. 62, Last updated, Version 1) CP000158_GR IDILO Idiomarina loihiensis Bacteria EBI 15-APR-2005 (Rel. 83, Last updated, Version 4) AE017340 JANMA Janthinobacterium sp. (strain Marseille) (Minibacterium massiliensis) Bacteria Genome Reviews 02-OCT-2007 (Rel. 81, Last updated, Version 2) CP000269_GR JANSC Jannaschia sp. (strain CCS1) Bacteria EBI 02-MAR-2006 (Rel. 87, Last updated, Version 1) CP000264 KLEP7 Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) Bacteria Genome Reviews 15-JAN-2008 (Rel. 85, Last updated, Version 2) CP000647_GR KLULA Kluyveromyces lactis Eukaryota EBI 17-APR-2005 (Rel. 83, Last updated, Version 4) CR382126 LACAC Lactobacillus acidophilus Bacteria EBI 17-APR-2005 (Rel. 83, Last updated, Version 4) CP000033 LACBA Lactobacillus brevis (strain ATCC 367 / JCM 1170) Bacteria EBI 14-NOV-2006 (Rel. 89, Last updated, Version 4) CP000416 LACC3 Lactobacillus casei (strain ATCC 334) Bacteria EBI 04-NOV-2006 (Rel. 89, Last updated, Version 3) CP000423 LACDA Lactobacillus delbrueckii subsp. bulgaricus (strain ATCC 11842 / DSM 20081) Bacteria EBI 14-JUN-2006 (Rel. 88, Last updated, Version 3) CR954253 LACDB Lactobacillus delbrueckii subsp. bulgaricus (strain ATCC BAA-365) Bacteria EBI 04-NOV-2006 (Rel. 89, Last updated, Version 3) CP000412 LACGA Lactobacillus gasseri (strain ATCC 33323 / DSM 20243) Bacteria EBI 14-NOV-2006 (Rel. 89, Last updated, Version 4) CP000413 LACH4 Lactobacillus helveticus (strain DPC 4571) Bacteria Genome Reviews 05-FEB-2008 (Rel. 86, Last updated, Version 1) CP000517_GR LACJO Lactobacillus johnsonii Bacteria NCBI NC_005362.1 GI:42518084 NC_005362 LACLA Lactococcus lactis subsp. lactis Bacteria Genome Reviews 11-SEP-2007 (Rel. 80, Last updated, Version 81) AE005176_GR LACLM Lactococcus lactis subsp. cremoris (strain MG1363) Bacteria Genome Reviews 17-APR-2007 (Rel. 72, Last updated, Version 3) AM406671_GR LACLS Lactococcus lactis subsp. cremoris (strain SK11) Bacteria EBI 04-NOV-2006 (Rel. 89, Last updated, Version 3) CP000425 LACPL Lactobacillus plantarum Bacteria NCBI NC_004567.1 GI:28376974 NC_004567 LACRF Lactobacillus reuteri (strain ATCC 23272 / DSM 20016 / F275) Bacteria Genome Reviews 05-FEB-2008 (Rel. 86, Last updated, Version 1) CP000705_GR LACS1 Lactobacillus salivarius subsp. salivarius (strain UCC118) Bacteria EBI 04-MAY-2006 (Rel. 87, Last updated, Version 4) CP000233 LACSS Lactobacillus sakei subsp. sakei (strain 23K) Bacteria EBI 10-NOV-2005 (Rel. 85, Last updated, Version 3) CR936503 LAWIP Lawsonia intracellularis (strain PHE/MN1-00) Bacteria EBI 28-JUL-2006 (Rel. 88, Last updated, Version 2) AM180252 LEGPA Legionella pneumophila (strain Paris) Bacteria EBI 17-APR-2005 (Rel. 83, Last updated, Version 4) CR628336 LEGPC Legionella pneumophila (strain Corby) Bacteria Genome Reviews 02-OCT-2007 (Rel. 81, Last updated, Version 2) CP000675_GR LEGPH Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152) Bacteria EBI 15-APR-2005 (Rel. 83, Last updated, Version 2) AE017354 LEGPL Legionella pneumophila (strain Lens) Bacteria EBI 17-APR-2005 (Rel. 83, Last updated, Version 4) CR628337 LEPBJ Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) Bacteria EBI 18-NOV-2006 (Rel. 89, Last updated, Version 2) CP000350 LEPBL Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) Bacteria EBI 19-OCT-2006 (Rel. 89, Last updated, Version 1) CP000348 LEPIC Leptospira interrogans (serogroup Icterohaemorrhagiae / serovar Copenhageni) Bacteria NCBI NC_005823.1 GI:45655914 NC_005823 LEPIN Leptospira interrogans Bacteria NCBI NC_004342 LEUMM Leuconostoc mesenteroides subsp. mesenteroides (strain ATCC 8293 / NCDO 523) Bacteria EBI 14-NOV-2006 (Rel. 89, Last updated, Version 5) CP000414 LISIN Listeria innocua Bacteria NCBI NC_003212.1 GI:16799079 NC_003212 LISMF Listeria monocytogenes (serotype 4b / strain F2365) Bacteria NCBI NC_002973.5 GI:46906224 NC_002973 LISMO Listeria monocytogenes Bacteria NCBI NC_003210.1 GI:16802048 NC_003210 LISW6 Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) Bacteria Genome Reviews 20-MAR-2007 (Rel. 70, Last updated, Version 2) AM263198_GR LODEL Lodderomyces elongisporus Eukaryota BROAD Institute Release 1.0 http://www.broad.mit.edu/annotation/genome/botrytis_cinerea/Downloads.html LOTGI Lottia gigantea Eukaryota JGI Sbi1_4, Filtered Models http://genome.jgi-psf.org/Lotgi1/Lotgi1.download.html LOXAF Loxodonta africana Eukaryota Ensembl Ensembl v40; BROAD E1; 28-JUL-2006 ftp://ftp.ensembl.org/pub/current_loxodonta_africana/data/flatfiles/embl/ MACMU Macaca mulatta Eukaryota Ensembl MMUL_1; Ensembl v41; 17-OCT-2006 ftp://ftp.ensembl.org/pub/current_macaca_mulatta/data/flatfiles/embl/ MAGGR Magnaporthe grisea Eukaryota BROAD Institute Release 5.0 http://www.broad.mit.edu/annotation/genome/magnaporthe_grisea/Downloads.html MAGMM Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) Bacteria EBI 08-DEC-2005 (Rel. 86, Last updated, Version 4) AP007255 MANSM Mannheimia succiniciproducens (strain MBEL55E) Bacteria NCBI NC_006300.1 GI:52424055 NC_006300 MARAV Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) Bacteria EBI 29-DEC-2006 (Rel. 90, Last updated, Version 1) CP000514 MARMM Maricaulis maris (strain MCS10) Bacteria Genome Reviews 14-NOV-2006 (Rel. 62, Last updated, Version 1) CP000449_GR MARMS Marinomonas sp. (strain MWYL1) Bacteria Genome Reviews 29-APR-2008 (Rel. 90, Last updated, Version 1) CP000749_GR MESFL Mesoplasma florum Bacteria NCBI NC_006055.1 GI:50364815 NC_006055 MESSB Mesorhizobium sp. (strain BNC1) Bacteria EBI 12-JUL-2006 (Rel. 88, Last updated, Version 1) CP000390 METCA Methylococcus capsulatus Bacteria NCBI NC_002977.5 GI:53802292 NC_002977 METFK Methylobacillus flagellatus (strain KT / ATTC 51484 / DSM 6875) Bacteria EBI 01-JUL-2006 (Rel. 88, Last updated, Version 2) CP000284 METPP Methylibium petroleiphilum (strain PM1) Bacteria Genome Reviews 17-APR-2007 (Rel. 72, Last updated, Version 3) CP000555_GR MICMU Microcebus murinus Eukaryota Ensembl Ensembl v48; micMur1; 27-NOV-2007 ftp://ftp.ensembl.org/pub/current_embl/microcebus_murinus/ MONDO Monodelphis domestica Eukaryota Ensembl Ensembl 45; MonDom 5.0; 29-MAY-2007 ftp://ftp.ensembl.org/pub/current_monodelphis_domestica/data/flatfiles/embl/ MOOTA Moorella thermoacetica (strain ATCC 39073) Bacteria EBI 24-FEB-2006 (Rel. 86, Last updated, Version 2) CP000232 MOUSE Mus musculus Eukaryota Ensembl Ensembl v48; NCBI m37; 28-NOV-2007 ftp://ftp.ensembl.org/pub/current_embl/mus_musculus/ MYCCT Mycoplasma capricolum subsp. capricolum (strain California kid / ATCC 27343 / NCTC 10154) Bacteria EBI 22-FEB-2006 (Rel. 86, Last updated, Version 2) CP000123 MYCGA Mycoplasma gallisepticum Bacteria Genome Reviews 11-SEP-2007 (Rel. 80, Last updated, Version 81) AE015450_GR MYCGE Mycoplasma genitalium Bacteria Genome Reviews 11-SEP-2007 (Rel. 80, Last updated, Version 82) L43967_GR MYCH2 Mycoplasma hyopneumoniae (strain 232) Bacteria EBI 15-APR-2005 (Rel. 83, Last updated, Version 3) AE017332 MYCH7 Mycoplasma hyopneumoniae (strain 7448) Bacteria EBI 21-SEP-2005 (Rel. 85, Last updated, Version 2) AE017244 MYCHJ Mycoplasma hyopneumoniae (strain J / ATCC 25934 / NCTC 10110) Bacteria EBI 21-SEP-2005 (Rel. 85, Last updated, Version 2) AE017243 MYCMO Mycoplasma mobile Bacteria NCBI NC_006908.1 GI:47458835 NC_006908 MYCMS Mycoplasma mycoides subsp. mycoides SC Bacteria Genome Reviews 11-SEP-2007 (Rel. 80, Last updated, Version 74) BX293980_GR MYCPE Mycoplasma penetrans Bacteria NCBI NC_004432.1 GI:26553452 NC_004432 MYCPN Mycoplasma pneumoniae Bacteria EBI Mycoplasma pneumoniae M129, complete genome. # ftp://ftp.ebi.ac.uk/pub/databases/embl/genomes/Bacteria/mpneumoniae MYCPU Mycoplasma pulmonis Bacteria NCBI NC_002771.1 GI:15828471 NC_002771 MYCS5 Mycoplasma synoviae (strain 53) Bacteria EBI 13-AUG-2005 (Rel. 84, Last updated, Version 3) AE017245 MYOLU Myotis lucifugus Eukaryota Ensembl Ensembl 44; myoLuc1; 6-APR-2007 ftp://ftp.ensembl.org/pub/current_myotis_lucifugus/flatfiles/embl/ MYXXD Myxococcus xanthus (strain DK 1622) Bacteria EBI 08-JUN-2006 (Rel. 88, Last updated, Version 1) CP000113 NATTJ Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) Bacteria Genome Reviews 01-JUL-2008 (Rel. 93, Last updated, Version 2) CP001034_GR NEIG1 Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) Bacteria EBI 14-APR-2005 (Rel. 83, Last updated, Version 2) AE004969 NEIM0 Neisseria meningitidis serogroup C (strain 053442) Bacteria EBI 05-DEC-2007 (Rel. 94, Last updated, Version 1) CP000381 NEIMA Neisseria meningitidis serogroup A Bacteria Genome Reviews 17-APR-2007 (Rel. 72, Last updated, Version 74) AL157959_GR NEIMB Neisseria meningitidis Bacteria NCBI AE002098 NEIMF Neisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / FAM18) Bacteria Genome Reviews 17-APR-2007 (Rel. 72, Last updated, Version 3) AM421808_GR NEOSM Neorickettsia sennetsu (strain Miyayama) Bacteria EBI 23-FEB-2006 (Rel. 86, Last updated, Version 1) CP000237 NITEC Nitrosomonas eutropha (strain C71) Bacteria EBI 15-DEC-2006 (Rel. 90, Last updated, Version 2) CP000450 NITEU Nitrosomonas europaea Bacteria NCBI NC_004757.1 GI:30248031 NC_004757 NITHX Nitrobacter hamburgensis (strain X14 / DSM 10229) Bacteria EBI 14-APR-2006 (Rel. 87, Last updated, Version 1) CP000319 NITMU Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) Bacteria EBI 16-NOV-2005 (Rel. 85, Last updated, Version 1) CP000103 NITOC Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) Bacteria EBI 06-OCT-2005 (Rel. 85, Last updated, Version 1) CP000127 NITSB Nitratiruptor sp. (strain SB155-2) Bacteria Genome Reviews 02-OCT-2007 (Rel. 81, Last updated, Version 2) AP009178_GR NITWN Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) Bacteria EBI 14-SEP-2005 (Rel. 85, Last updated, Version 1) CP000115 NOVAD Novosphingobium aromaticivorans (strain DSM 12444) Bacteria EBI 24-FEB-2006 (Rel. 86, Last updated, Version 2) CP000248 OCEIH Oceanobacillus iheyensis Bacteria NCBI NC_004193.1 GI:23097455 NC_004193 OCHA4 Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) Bacteria Genome Reviews 04-DEC-2007 (Rel. 84, Last updated, Version 3) CP000758_GR OCHPR Ochotona princeps Eukaryota Ensembl Ensembl v48; OchPri2.0; 27-NOV-2007 ftp://ftp.ensembl.org/pub/current_embl/ochotona_princeps/ OENOB Oenococcus oeni (strain BAA-331 / PSU-1) Bacteria EBI 04-NOV-2006 (Rel. 89, Last updated, Version 3) CP000411 ONYPE Onion yellows phytoplasma Bacteria NCBI NC_005303.1 GI:39938486 NC_005303 ORITB Orientia tsutsugamushi (strain Boryong) Bacteria Genome Reviews 24-JUL-2007 (Rel. 78, Last updated, Version 1) AM494475_GR ORNAN Ornithorhynchus anatinus Eukaryota Ensembl OANA5; Ensembl 49; 20-FEB-2008 ftp://ftp.ensembl.org/pub/current_embl/ornithorhynchus_anatinus/ ORYLA Oryzias latipes Eukaryota Ensembl MEDAKA1; Ensembl 41; 20-OCT-2006 ftp://ftp.ensembl.org/pub/current_oryzias_latipes/data/flatfiles/embl/ OTOGA Otolemur garnettii Eukaryota Ensembl Ensembl 44; otoGar1; 6-APR-2007 ftp://ftp.ensembl.org/pub/current_otolemur_garnettii/flatfiles/embl/ PANTR Pan troglodytes Eukaryota Ensembl CHIMP2.1; Ensembl v41; 4-OCT-2006 ftp://ftp.ensembl.org/pub/current_chimp/data/flatfiles/embl/ PARDP Paracoccus denitrificans (strain Pd 1222) Bacteria EBI 14-DEC-2006 (Rel. 90, Last updated, Version 1) CP000489 PARL1 Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) Bacteria Genome Reviews 05-FEB-2008 (Rel. 86, Last updated, Version 2) CP000774_GR PASMU Pasteurella multocida Bacteria NCBI AE004439 PEDPA Pediococcus pentosaceus (strain ATCC 25745 / 183-1w) Bacteria EBI 04-NOV-2006 (Rel. 89, Last updated, Version 3) CP000422 PELCD Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) Bacteria Genome Reviews 11-SEP-2007 (Rel. 80, Last updated, Version 36) CP000142_GR PELPD Pelobacter propionicus (strain DSM 2379) Bacteria EBI 14-FEB-2007 (Rel. 90, Last updated, Version 3) CP000482 PELUB Pelagibacter ubique Bacteria EBI 26-JUL-2005 (Rel. 84, Last updated, Version 1) CP000084 PHANO Phaeosphaeria nodorum Eukaryota BROAD Institute Release 1.0 http://www.broad.mit.edu/annotation/genome/stagonospora_nodorum/Downloads.html PHOLL Photorhabdus luminescens (subsp. laumondii) Bacteria NCBI NC_005126.1 GI:37524032 NC_005126 PHOPR Photobacterium profundum Bacteria NCBI NC_006370.1 GI:54307237 NC_006370 PICST Pichia stipitis Eukaryota EBI 04-JUL-2007 (Rel. 92, Last updated, Version 3) CM000437 POLNA Polaromonas naphthalenivorans (strain CJ2) Bacteria Genome Reviews 20-MAR-2007 (Rel. 70, Last updated, Version 2) CP000529_GR POLSJ Polaromonas sp. (strain JS666 / ATCC BAA-500) Bacteria EBI 03-JUL-2006 (Rel. 88, Last updated, Version 1) CP000316 POLSQ Polynucleobacter sp. (strain QLW-P1DMWA-1) Bacteria Genome Reviews 18-MAR-2008 (Rel. 88, Last updated, Version 2) CP000655_GR PONPA Pongo pygmaeus abelii Eukaryota Ensembl Ensembl v49; PPYG2; 22-FEB-2008 ftp://ftp.ensembl.org/pub/current_embl/pongo_pygmaeus/ PSE14 Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) Bacteria EBI 14-SEP-2005 (Rel. 85, Last updated, Version 3) CP000058 PSEA6 Pseudoalteromonas atlantica (strain T6c / BAA-1087) Bacteria Genome Reviews 14-NOV-2006 (Rel. 62, Last updated, Version 2) CP000388_GR PSEA7 Pseudomonas aeruginosa (strain PA7) Bacteria Genome Reviews 05-FEB-2008 (Rel. 86, Last updated, Version 2) CP000744_GR PSEAB Pseudomonas aeruginosa (strain UCBPP-PA14) Bacteria EBI 15-NOV-2006 (Rel. 89, Last updated, Version 2) CP000438 PSEAE Pseudomonas aeruginosa Bacteria NCBI AE004091 PSEE4 Pseudomonas entomophila (strain L48) Bacteria EBI 31-AUG-2006 (Rel. 89, Last updated, Version 3) CT573326 PSEF5 Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) Bacteria EBI 16-JUL-2005 (Rel. 84, Last updated, Version 2) CP000076 PSEHT Pseudoalteromonas haloplanktis (strain TAC 125) Bacteria EBI 18-OCT-2005 (Rel. 85, Last updated, Version 3) CR954246 PSEMY Pseudomonas mendocina (strain ymp) Bacteria Genome Reviews 05-FEB-2008 (Rel. 86, Last updated, Version 2) CP000680_GR PSEP1 Pseudomonas putida (strain F1 / ATCC 700007) Bacteria Genome Reviews 05-FEB-2008 (Rel. 86, Last updated, Version 2) CP000712_GR PSEPF Pseudomonas fluorescens (strain PfO-1) Bacteria EBI 10-OCT-2005 (Rel. 85, Last updated, Version 1) CP000094 PSEPG Pseudomonas putida (strain GB-1) Bacteria EBI 07-FEB-2008 (Rel. 94, Last updated, Version 1) CP000926 PSEPK Pseudomonas putida (strain KT2440) Bacteria NCBI NC_002947.3 GI:26986745 NC_002947 PSEPW Pseudomonas putida (strain W619) Bacteria Genome Reviews 01-JUL-2008 (Rel. 93, Last updated, Version 3) CP000949_GR PSESM Pseudomonas syringae (pv. tomato) Bacteria NCBI NC_004578.1 GI:28867243 NC_004578 PSEU2 Pseudomonas syringae pv. syringae (strain B728a) Bacteria EBI 04-AUG-2005 (Rel. 84, Last updated, Version 3) CP000075 PSEU5 Pseudomonas stutzeri (strain A1501) Bacteria Genome Reviews 26-JUN-2007 (Rel. 76, Last updated, Version 2) CP000304_GR PSYAR Psychrobacter arcticum Bacteria EBI 28-JUL-2005 (Rel. 84, Last updated, Version 3) CP000082 PSYCK Psychrobacter cryohalolentis (strain K5) Bacteria EBI 19-APR-2006 (Rel. 87, Last updated, Version 1) CP000323 PSYIN Psychromonas ingrahamii (strain 37) Bacteria EBI 23-JAN-2007 (Rel. 90, Last updated, Version 2) CP000510 PSYWF Psychrobacter sp. (strain PRwf-1) Bacteria Genome Reviews 26-FEB-2008 (Rel. 87, Last updated, Version 2) CP000713_GR RABIT Oryctolagus cuniculus Eukaryota Ensembl Ensembl v40; RABBIT; 30-JUL-2006 ftp://ftp.ensembl.org/pub/current_oryctolagus_cuniculus/data/flatfiles/embl/ RALEH Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) Bacteria EBI 30-AUG-2006 (Rel. 89, Last updated, Version 1) AM260479 RALEJ Ralstonia eutropha (strain JMP134) Bacteria EBI 12-AUG-2005 (Rel. 84, Last updated, Version 1) CP000090 RALME Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) Bacteria EBI 29-APR-2006 (Rel. 87, Last updated, Version 2) CP000352 RALSO Ralstonia solanacearum Bacteria NCBI NC_003295.1 GI:17544719 NC_003295 RATNO Rattus norvegicus Eukaryota Ensembl RGSC3.4; Ensembl 41; 3-OCT-2006 ftp://ftp.ensembl.org/pub/current_rat/data/flatfiles/embl/ RHIEC Rhizobium etli (strain CFN 42 / ATCC 51251) Bacteria EBI 11-MAR-2006 (Rel. 87, Last updated, Version 3) CP000133 RHIL3 Rhizobium leguminosarum bv. viciae (strain 3841) Bacteria EBI 16-MAY-2006 (Rel. 87, Last updated, Version 2) AM236080 RHILO Rhizobium loti Bacteria NCBI NC_002678.1 GI:13470324 NC_002678 RHIME Rhizobium meliloti Bacteria NCBI NC_003047.1 GI:15963753 NC_003047 RHOFD Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) Bacteria EBI 13-MAR-2006 (Rel. 87, Last updated, Version 1) CP000267 RHOP2 Rhodopseudomonas palustris (strain HaA2) Bacteria EBI 08-FEB-2006 (Rel. 86, Last updated, Version 2) CP000250 RHOP5 Rhodopseudomonas palustris (strain BisA53) Bacteria EBI 05-OCT-2006 (Rel. 89, Last updated, Version 1) CP000463 RHOPA Rhodopseudomonas palustris Bacteria NCBI NC_005296.1 GI:39933080 NC_005296 RHOPB Rhodopseudomonas palustris (strain BisB18) Bacteria EBI 22-MAR-2006 (Rel. 87, Last updated, Version 1) CP000301 RHOPS Rhodopseudomonas palustris (strain BisB5) Bacteria EBI 03-JUL-2006 (Rel. 88, Last updated, Version 1) CP000283 RHORT Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) Bacteria EBI 10-FEB-2006 (Rel. 86, Last updated, Version 2) CP000230 RHOS1 Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) Bacteria EBI 27-FEB-2007 (Rel. 90, Last updated, Version 1) CP000577 RHOS4 Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) Bacteria EBI 14-OCT-2005 (Rel. 85, Last updated, Version 2) CP000143 RHOS5 Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) Bacteria Genome Reviews 04-DEC-2007 (Rel. 84, Last updated, Version 3) CP000661_GR RICAH Rickettsia akari (strain Hartford) Bacteria Genome Reviews 15-JAN-2008 (Rel. 85, Last updated, Version 2) CP000847_GR RICB8 Rickettsia bellii (strain OSU 85-389) Bacteria Genome Reviews 15-JAN-2008 (Rel. 85, Last updated, Version 2) CP000849_GR RICBR Rickettsia bellii (strain RML369-C) Bacteria EBI 09-APR-2006 (Rel. 87, Last updated, Version 1) CP000087 RICCK Rickettsia canadensis (strain McKiel) Bacteria Genome Reviews 15-JAN-2008 (Rel. 85, Last updated, Version 2) CP000409_GR RICCN Rickettsia conorii Bacteria NCBI AE006914.1 GI:25307999 AE006914 RICFE Rickettsia felis Bacteria EBI 19-AUG-2005 (Rel. 84, Last updated, Version 2) CP000053 RICM5 Rickettsia massiliae (strain Mtu5) Bacteria Genome Reviews 15-JAN-2008 (Rel. 85, Last updated, Version 2) CP000683_GR RICPR Rickettsia prowazekii Bacteria NCBI NC_000963.1 GI:15603881 NC_000963 RICRO Rickettsia rickettsii (strain Iowa) Bacteria EBI 18-JAN-2008 (Rel. 94, Last updated, Version 1) CP000766 RICRS Rickettsia rickettsii (strain Sheila Smith) Bacteria Genome Reviews 15-JAN-2008 (Rel. 85, Last updated, Version 2) CP000848_GR RICTY Rickettsia typhi Bacteria NCBI NC_006142.1 GI:51473215 NC_006142 ROSDO Roseobacter denitrificans (strain ATCC 33942 / OCh 114) Bacteria EBI 23-JUN-2006 (Rel. 88, Last updated, Version 1) CP000362 RUTMC Ruthia magnifica subsp. Calyptogena magnifica Bacteria Genome Reviews 17-APR-2007 (Rel. 72, Last updated, Version 3) CP000488_GR SACD2 Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) Bacteria EBI 20-MAR-2006 (Rel. 87, Last updated, Version 1) CP000282 SALAR Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) Bacteria Genome Reviews 18-MAR-2008 (Rel. 88, Last updated, Version 2) CP000880_GR SALCH Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67 Bacteria EBI 15-APR-2005 (Rel. 83, Last updated, Version 3) AE017220 SALPA Salmonella paratyphi-a Bacteria EBI 09-APR-2005 (Rel. 83, Last updated, Version 4) CP000026 SALTI Salmonella typhi Bacteria EBI 18-JUN-2004 (Rel. 80, Last updated, Version 4) STYPHCT18 SALTY Salmonella typhimurium Bacteria NCBI NC_003197.1 GI:16763390 NC_003197 SCHPO Schizosaccharomyces pombe Eukaryota EBI 02-SEP-2004 (Rel. 81, Last updated, Version 7) AL672256 SERP5 Serratia proteamaculans (strain 568) Bacteria Genome Reviews 05-FEB-2008 (Rel. 86, Last updated, Version 1) CP000826_GR SHEAM Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) Bacteria EBI 23-DEC-2006 (Rel. 90, Last updated, Version 1) CP000507 SHEB5 Shewanella baltica (strain OS155 / ATCC BAA-1091) Bacteria Genome Reviews 04-DEC-2007 (Rel. 84, Last updated, Version 2) CP000563_GR SHEB8 Shewanella baltica (strain OS185) Bacteria Genome Reviews 04-DEC-2007 (Rel. 84, Last updated, Version 2) CP000753_GR SHEB9 Shewanella baltica (strain OS195) Bacteria NCBI CP000891.1 GI:160858648 CP000891 SHEDO Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) Bacteria Genome Reviews 14-NOV-2006 (Rel. 62, Last updated, Version 1) CP000302_GR SHEFN Shewanella frigidimarina (strain NCIMB 400) Bacteria Genome Reviews 14-NOV-2006 (Rel. 62, Last updated, Version 1) CP000447_GR SHEHH Shewanella halifaxensis (strain HAW-EB4) Bacteria Genome Reviews 29-APR-2008 (Rel. 90, Last updated, Version 1) CP000931_GR SHELP Shewanella loihica (strain BAA-1088 / PV-4) Bacteria EBI 11-MAR-2007 (Rel. 91, Last updated, Version 1) CP000606 SHEON Shewanella oneidensis Bacteria Genome Reviews 11-SEP-2007 (Rel. 80, Last updated, Version 83) AE014299_GR SHEPA Shewanella pealeana (strain ANG-SQ1 / ATCC 700345) Bacteria NCBI CP000851.1 GI:157844830 CP000851 SHEPC Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) Bacteria Genome Reviews 04-DEC-2007 (Rel. 84, Last updated, Version 2) CP000681_GR SHESA Shewanella sp. (strain ANA-3) Bacteria EBI 17-NOV-2006 (Rel. 89, Last updated, Version 3) CP000469 SHESH Shewanella sediminis (strain HAW-EB3) Bacteria NCBI CP000821.1 GI:157315515 CP000821 SHESM Shewanella sp. (strain MR-4) Bacteria Genome Reviews 14-NOV-2006 (Rel. 62, Last updated, Version 1) CP000446_GR SHESR Shewanella sp. (strain MR-7) Bacteria Genome Reviews 14-NOV-2006 (Rel. 62, Last updated, Version 1) CP000444_GR SHESW Shewanella sp. (strain W3-18-1) Bacteria EBI 04-JAN-2007 (Rel. 90, Last updated, Version 1) CP000503 SHIBS Shigella boydii serotype 4 (strain Sb227) Bacteria EBI 10-NOV-2005 (Rel. 85, Last updated, Version 1) CP000036 SHIDS Shigella dysenteriae serotype 1 (strain Sd197) Bacteria EBI 30-NOV-2005 (Rel. 85, Last updated, Version 2) CP000034 SHIF8 Shigella flexneri serotype 5b (strain 8401) Bacteria EBI 22-JUL-2006 (Rel. 88, Last updated, Version 1) CP000266 SHIFL Shigella flexneri Bacteria NCBI NC_004337.1 GI:24111450 NC_004337 SHISS Shigella sonnei (strain Ss046) Bacteria EBI 10-NOV-2005 (Rel. 85, Last updated, Version 2) CP000038 SILPO Silicibacter pomeroyi Bacteria EBI 17-APR-2005 (Rel. 83, Last updated, Version 3) CP000031 SILST Silicibacter sp. (strain TM1040) Bacteria EBI 24-MAY-2006 (Rel. 87, Last updated, Version 1) CP000377 SINMW Sinorhizobium medicae (strain WSM419) Bacteria Genome Reviews 15-JAN-2008 (Rel. 85, Last updated, Version 3) CP000738_GR SODGM Sodalis glossinidius (strain morsitans) Bacteria EBI 27-FEB-2006 (Rel. 86, Last updated, Version 3) AP008232 SORAR Sorex araneus Eukaryota Ensembl Ensembl 45; sorAra1; 29-MAY-2007 ftp://ftp.ensembl.org/pub/current_sorex_araneus/flatfiles/embl/ SORC5 Sorangium cellulosum (strain So ce56) Bacteria Genome Reviews 18-MAR-2008 (Rel. 88, Last updated, Version 2) AM746676_GR SPETR Spermophilus tridecemlineatus Eukaryota Ensembl Ensembl 44; speTri1; 8-APR-2007 ftp://ftp.ensembl.org/pub/current_spermophilus_tridecemlineatus/flatfiles/embl/ SPHAL Sphingopyxis alaskensis Bacteria EBI 19-MAY-2006 (Rel. 87, Last updated, Version 1) CP000356 SPHWW Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) Bacteria Genome Reviews 05-FEB-2008 (Rel. 86, Last updated, Version 2) CP000699_GR STAA1 Staphylococcus aureus (strain Mu3 / ATCC 700698) Bacteria Genome Reviews 04-DEC-2007 (Rel. 84, Last updated, Version 2) AP009324_GR STAA2 Staphylococcus aureus (strain JH1) Bacteria EBI 29-JUN-2007 (Rel. 92, Last updated, Version 1) CP000736 STAA3 Staphylococcus aureus (strain USA300) Bacteria EBI 24-FEB-2006 (Rel. 86, Last updated, Version 2) CP000255 STAA8 Staphylococcus aureus (strain NCTC 8325) Bacteria EBI 17-FEB-2006 (Rel. 86, Last updated, Version 1) CP000253 STAA9 Staphylococcus aureus (strain JH9) Bacteria EBI 09-DEC-2007 (Rel. 94, Last updated, Version 2) CP000703 STAAB Staphylococcus aureus (strain bovine RF122) Bacteria EBI 24-NOV-2005 (Rel. 85, Last updated, Version 1) AJ938182 STAAC Staphylococcus aureus (strain COL) Bacteria EBI 28-APR-2005 (Rel. 83, Last updated, Version 5) CP000046 STAAE Staphylococcus aureus (strain Newman) Bacteria Genome Reviews 05-FEB-2008 (Rel. 86, Last updated, Version 2) AP009351_GR STAAM Staphylococcus aureus (strain Mu50 / ATCC 700699) Bacteria NCBI NC_002758.1 GI:15922990 NC_002758 STAAN Staphylococcus aureus (strain N315) Bacteria NCBI NC_002745.2 GI:29165615 NC_002745 STAAR Staphylococcus aureus (strain MRSA252) Bacteria NCBI NC_002952.2 GI:49482253 NC_002952 STAAS Staphylococcus aureus (strain MSSA476) Bacteria NCBI NC_002953.3 GI:49484912 NC_002953 STAAT Staphylococcus aureus (strain USA300 / TCH1516) Bacteria EBI 17-NOV-2007 (Rel. 93, Last updated, Version 1) CP000730 STAAW Staphylococcus aureus (strain MW2) Bacteria NCBI NC_003923.1 GI:21281729 NC_003923 STAEQ Staphylococcus epidermidis (strain ATCC 35984 / RP62A) Bacteria EBI 17-APR-2005 (Rel. 83, Last updated, Version 4) CP000029 STAES Staphylococcus epidermidis (strain ATCC 12228) Bacteria Genome Reviews 22-NOV-2005 (Rel. 40, Last updated, Version 44) AE015929_GR STAHJ Staphylococcus haemolyticus (strain JCSC1435) Bacteria EBI 27-JUL-2005 (Rel. 84, Last updated, Version 2) AP006716 STAS1 Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) Bacteria EBI 21-SEP-2005 (Rel. 85, Last updated, Version 4) AP008934 STRA1 Streptococcus agalactiae serotype Ia Bacteria EBI 30-SEP-2005 (Rel. 85, Last updated, Version 1) CP000114 STRA3 Streptococcus agalactiae (serotype III) Bacteria NCBI NC_004368.1 GI:25010075 NC_004368 STRA5 Streptococcus agalactiae (serotype V) Bacteria NCBI NC_004116.1 GI:22536185 NC_004116 STRGC Streptococcus gordonii (strain Challis / ATCC 35105 / CH1 / DL1 / V288) Bacteria Genome Reviews 26-FEB-2008 (Rel. 87, Last updated, Version 2) CP000725_GR STRMK Stenotrophomonas maltophilia (strain K279a) Bacteria Genome Reviews 01-JUL-2008 (Rel. 93, Last updated, Version 1) AM743169_GR STRMU Streptococcus mutans Bacteria NCBI NC_004350.1 GI:24378532 NC_004350 STRP1 Streptococcus pyogenes serotype M1 Bacteria Genome Reviews 26-SEP-2005 (Rel. 36, Last updated, Version 41) AE004092_GR STRP2 Streptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466) Bacteria EBI 20-DEC-2006 (Rel. 90, Last updated, Version 2) CP000410 STRP3 Streptococcus pyogenes (serotype M3) Bacteria NCBI NC_004070.1 GI:21909536 NC_004070 STRP6 Streptococcus pyogenes (serotype M6) Bacteria EBI 17-APR-2005 (Rel. 83, Last updated, Version 2) CP000003 STRP8 Streptococcus pyogenes (serotype M18) Bacteria NCBI NC_003485.1 GI:19745201 NC_003485 STRPB Streptococcus pyogenes serotype M12 (strain MGAS2096) Bacteria EBI 31-MAY-2006 (Rel. 88, Last updated, Version 2) CP000261 STRPC Streptococcus pyogenes serotype M12 (strain MGAS9429) Bacteria EBI 31-MAY-2006 (Rel. 88, Last updated, Version 2) CP000259 STRPD Streptococcus pyogenes serotype M2 (strain MGAS10270) Bacteria EBI 31-MAY-2006 (Rel. 88, Last updated, Version 2) CP000260 STRPF Streptococcus pyogenes serotype M4 (strain MGAS10750) Bacteria EBI 31-MAY-2006 (Rel. 88, Last updated, Version 2) CP000262 STRPG Streptococcus pyogenes serotype M5 (strain Manfredo) Bacteria Genome Reviews 17-APR-2007 (Rel. 72, Last updated, Version 3) AM295007_GR STRPM Streptococcus pyogenes serotype M28 Bacteria EBI 19-AUG-2005 (Rel. 84, Last updated, Version 2) CP000056 STRPN Streptococcus pneumoniae Bacteria NCBI NC_003028.1 GI:15899949 NC_003028 STRR6 Streptococcus pneumoniae (strain ATCC BAA-255 / R6) Bacteria NCBI NC_003098.1 GI:15902044 NC_003098 STRS2 Streptococcus suis (strain 98HAH33) Bacteria Genome Reviews 26-JUN-2007 (Rel. 76, Last updated, Version 1) CP000408_GR STRSV Streptococcus sanguinis (strain SK36) Bacteria Genome Reviews 17-APR-2007 (Rel. 72, Last updated, Version 1) CP000387_GR STRSY Streptococcus suis (strain 05ZYH33) Bacteria Genome Reviews 26-JUN-2007 (Rel. 76, Last updated, Version 1) CP000407_GR STRT1 Streptococcus thermophilus (strain CNRZ 1066) Bacteria EBI 17-APR-2005 (Rel. 83, Last updated, Version 4) CP000024 STRT2 Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311) Bacteria EBI 17-APR-2005 (Rel. 83, Last updated, Version 5) CP000023 STRTD Streptococcus thermophilus (strain ATCC BAA-491 / LMD-9) Bacteria EBI 04-NOV-2006 (Rel. 89, Last updated, Version 3) CP000419 SULDN Sulfurimonas denitrificans (strain ATCC 33889 / DSM 1251) Bacteria Genome Reviews 18-MAR-2008 (Rel. 88, Last updated, Version 40) CP000153_GR SULNB Sulfurovum sp. (strain NBC37-1) Bacteria Genome Reviews 02-OCT-2007 (Rel. 81, Last updated, Version 2) AP009179_GR SYNAS Syntrophus aciditrophicus (strain SB) Bacteria EBI 30-JAN-2006 (Rel. 86, Last updated, Version 2) CP000252 SYNFM Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) Bacteria EBI 14-NOV-2006 (Rel. 89, Last updated, Version 2) CP000478 SYNWW Syntrophomonas wolfei subsp. wolfei (strain Goettingen) Bacteria Genome Reviews 14-NOV-2006 (Rel. 62, Last updated, Version 1) CP000448_GR TETNG Tetraodon nigroviridis Eukaryota Ensembl TETRAODON7; 24-MAR-2005 ftp://ftp.ensembl.org/pub/current_tetraodon/data/flatfiles/embl/ THETN Thermoanaerobacter tengcongensis Bacteria NCBI NC_003869.1 GI:20806542 NC_003869 THICR Thiomicrospira crunogena (strain XCL-2) Bacteria EBI 02-NOV-2005 (Rel. 85, Last updated, Version 1) CP000109 THIDA Thiobacillus denitrificans (strain ATCC 25259) Bacteria EBI 05-SEP-2005 (Rel. 85, Last updated, Version 1) CP000116 TREDE Treponema denticola Bacteria NCBI NC_002967.9 GI:42516522 NC_002967 TREPA Treponema pallidum Bacteria NCBI NC_000919.1 GI:15638995 NC_000919 TUPGB Tupaia belangeri Eukaryota Ensembl Ensembl 44; tupBel1; 8-APR-2007 ftp://ftp.ensembl.org/pub/current_tupaia_belangeri/flatfiles/embl/ UREPA Ureaplasma parvum Bacteria NCBI NC_002162.1 GI:13357558 NC_002162 USTMA Ustilago maydis Eukaryota BROAD Institute Release 1.0 http://www.broad.mit.edu/annotation/genome/ustilago_maydis/Downloads.html VEREI Verminephrobacter eiseniae (strain EF01-2) Bacteria Genome Reviews 17-APR-2007 (Rel. 72, Last updated, Version 3) CP000542_GR VESOH Vesicomyosocius okutanii subsp. Calyptogena okutanii (strain HA) Bacteria Genome Reviews 26-JUN-2007 (Rel. 76, Last updated, Version 1) AP009247_GR VIBCH Vibrio cholerae Bacteria NCBI NC_002505.1 GI:15640032 NC_002505 VIBF1 Vibrio fischeri (strain ATCC 700601 / ES114) Bacteria EBI 17-APR-2005 (Rel. 83, Last updated, Version 2) CP000020 VIBPA Vibrio parahaemolyticus Bacteria NCBI NC_004603.1 GI:28896774 NC_004603 VIBVU Vibrio vulnificus Bacteria NCBI NC_004459.1 GI:27363490 NC_004459 VIBVY Vibrio vulnificus (strain YJ016) Bacteria Genome Reviews 11-SEP-2007 (Rel. 80, Last updated, Version 81) BA000037_GR WIGBR Wigglesworthia glossinidia brevipalpis Bacteria NCBI NC_004344.2 GI:32490749 NC_004344 WOLPM Wolbachia pipientis wMel Bacteria NCBI NC_002978.6 GI:42519920 NC_002978 WOLSU Wolinella succinogenes Bacteria NCBI NC_005090.1 GI:34556458 NC_005090 WOLTR Wolbachia sp. (subsp. Brugia malayi) (strain TRS) Bacteria EBI 15-APR-2005 (Rel. 83, Last updated, Version 2) AE017321 XANAC Xanthomonas axonopodis (pv. citri) Bacteria NCBI NC_003919.1 GI:21240774 NC_003919 XANC5 Xanthomonas campestris pv. vesicatoria (strain 85-10) Bacteria EBI 20-OCT-2005 (Rel. 85, Last updated, Version 1) AM039952 XANC8 Xanthomonas campestris pv. campestris (strain 8004) Bacteria EBI 18-JUN-2005 (Rel. 84, Last updated, Version 2) CP000050 XANCB Xanthomonas campestris pv. campestris (strain B100) Bacteria Genome Reviews 01-JUL-2008 (Rel. 93, Last updated, Version 3) AM920689_GR XANCP Xanthomonas campestris Bacteria EBI 18-JUL-2002 (Rel. 72, Last updated, Version 1) AE008922 XANOM Xanthomonas oryzae pv. oryzae (strain MAFF 311018) Bacteria EBI 26-JAN-2006 (Rel. 86, Last updated, Version 2) AP008229 XANOR Xanthomonas oryzae (pv. oryzae) Bacteria EBI 14-APR-2005 (Rel. 83, Last updated, Version 2) AE013598 XENTR Xenopus tropicalis Eukaryota Ensembl JGI4.1; 3-JUN-2006 ftp://ftp.ensembl.org/pub/current_xenopus_tropicalis/data/flatfiles/embl/ XYLFA Xylella fastidiosa Bacteria NCBI NC_002488.1 GI:15836605 NC_002488 XYLFT Xylella fastidiosa Bacteria NCBI NC_004556 2519802 bp DNA circular BCT 04-JUN-2004 NC_004556 YARLI Yarrowia lipolytica Eukaryota EBI 17-APR-2005 (Rel. 83, Last updated, Version 6) CR382131 YEAST Saccharomyces cerevisiae Eukaryota EBI 26-SEP-2005 (Rel. 36, Last updated, Version 1) Z71256_GR YERE8 Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) Bacteria Genome Reviews 20-MAR-2007 (Rel. 70, Last updated, Version 2) AM286415_GR YERP3 Yersinia pseudotuberculosis (serotype O:1b / strain IP 31758) Bacteria Genome Reviews 05-FEB-2008 (Rel. 86, Last updated, Version 2) CP000720_GR YERPA Yersinia pestis (biovar Antiqua strain Antiqua) Bacteria Genome Reviews 03-OCT-2006 (Rel. 59, Last updated, Version 2) CP000308_GR YERPE Yersinia pestis Bacteria NCBI NC_003143.1 GI:16120353 NC_003143 YERPN Yersinia pestis (biovar Antiqua strain Nepal516) Bacteria Genome Reviews 03-OCT-2006 (Rel. 59, Last updated, Version 2) CP000305_GR YERPP Yersinia pestis (strain Pestoides F) Bacteria Genome Reviews 26-JUN-2007 (Rel. 76, Last updated, Version 1) CP000668_GR YERPS Yersinia pseudotuberculosis Bacteria NCBI NC_006155.1 GI:51594359 NC_006155 ZYMMO Zymomonas mobilis Bacteria EBI 14-APR-2005 (Rel. 83, Last updated, Version 3) AE008692