Links

OMA (Orthologous MAtrix), which classifies genes from around 2000 species into families of orthologs.
OMA Standalone, to identify orthologs among custom genomes.
ALF, a powerful yet easy-to-use gene/genome sequence simulation tool (available both as downloadable version and web interface).
SWPS3, a highly optimised Smith-Waterman implementation for x86 and IBM Cell B.E. architectures.
Orthology Benchmark Service, a web-based server to assess the quality of ortholog predictions.
Phylo.io, a web-based phylogenetic tree visualisation tool with powerful side-by-side comparison features.
ESPRIT (Establishing Split PRoteins in Tentative genomes), to identify split genes in fragmented genome assemblies, available as part of the OMA standalone package.
QTLsearch, a tool to prioritise candidate causal genes from QTL analysis, based on prior knowledge and using an evolutionary framework
Lab Github account