swps3
|
#include <swps3.h>
Public Attributes | |
double | gapExt |
gap extension penalty | |
double | gapOpen |
gap initiation penalty | |
double | threshold |
maximum score | |
double Options::gapExt |
gap extension penalty
Definition at line 54 of file swps3.h.
Referenced by dynProgrLocal(), dynProgrLocal2(), main(), SPEInit(), swps3_alignmentByteSPE(), swps3_alignmentByteSSE(), swps3_alignmentFloatSPE(), swps3_alignmentShort2SSE(), swps3_alignmentShortSPE(), swps3_alignmentShortSSE(), and swps3_alignScalar().
double Options::gapOpen |
gap initiation penalty
Definition at line 53 of file swps3.h.
Referenced by dynProgrLocal(), dynProgrLocal2(), main(), SPEInit(), swps3_alignmentByteSPE(), swps3_alignmentByteSSE(), swps3_alignmentByteSSE_lin(), swps3_alignmentFloatSPE(), swps3_alignmentShort2SSE(), swps3_alignmentShortSPE(), swps3_alignmentShortSSE(), swps3_alignmentShortSSE_lin(), and swps3_alignScalar().
double Options::threshold |