swps3
DynProgr_sse_short.h File Reference

Profile generation and alignment for packed short vectors on SSE2. More...

#include "swps3.h"
#include "matrix.h"
#include <xmmintrin.h>
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Classes

struct  ProfileShort
 

Functions

double swps3_alignmentShortSSE (ProfileShort *query, const char *db, int dbLen, Options *options)
 
ProfileShortswps3_createProfileShortSSE (const char *query, int queryLen, SBMatrix matrix)
 
void swps3_freeProfileShortSSE (ProfileShort *profile)
 

Detailed Description

Profile generation and alignment for packed short vectors on SSE2.

Definition in file DynProgr_sse_short.h.

Function Documentation

double swps3_alignmentShortSSE ( ProfileShort query,
const char *  db,
int  dbLen,
Options options 
)
ProfileShort* swps3_createProfileShortSSE ( const char *  query,
int  queryLen,
SBMatrix  matrix 
)
void swps3_freeProfileShortSSE ( ProfileShort profile)

Definition at line 542 of file DynProgr_sse_short.c.

Referenced by main().