swps3
DynProgr_sse_short.c File Reference

Profile generation and alignment for packed short vectors on SSE2. More...

#include "DynProgr_sse_short.h"
#include <stdio.h>
#include <unistd.h>
#include <float.h>
Include dependency graph for DynProgr_sse_short.c:

Go to the source code of this file.

Macros

#define PAGE_ALIGN(x)   (((size_t)(x)+sysconf(_SC_PAGESIZE)-1)&~(sysconf(_SC_PAGESIZE)-1))
 

Functions

double swps3_alignmentShort2SSE (ProfileShort *query, const char *db, int dbLen, Options *options)
 
EXPORT double swps3_alignmentShortSSE (ProfileShort *query, const char *db, int dbLen, Options *options)
 
EXPORT double swps3_alignmentShortSSE_lin (ProfileShort *query, const char *db, int dbLen, Options *options)
 
EXPORT ProfileShortswps3_createProfileShortSSE (const char *query, int queryLen, SBMatrix matrix)
 
EXPORT void swps3_freeProfileShortSSE (ProfileShort *profile)
 

Detailed Description

Profile generation and alignment for packed short vectors on SSE2.

Definition in file DynProgr_sse_short.c.

Macro Definition Documentation

#define PAGE_ALIGN (   x)    (((size_t)(x)+sysconf(_SC_PAGESIZE)-1)&~(sysconf(_SC_PAGESIZE)-1))

Definition at line 35 of file DynProgr_sse_short.c.

Referenced by swps3_createProfileShortSSE().

Function Documentation

double swps3_alignmentShort2SSE ( ProfileShort query,
const char *  db,
int  dbLen,
Options options 
)
EXPORT double swps3_alignmentShortSSE ( ProfileShort query,
const char *  db,
int  dbLen,
Options options 
)
EXPORT double swps3_alignmentShortSSE_lin ( ProfileShort query,
const char *  db,
int  dbLen,
Options options 
)
EXPORT ProfileShort* swps3_createProfileShortSSE ( const char *  query,
int  queryLen,
SBMatrix  matrix 
)
EXPORT void swps3_freeProfileShortSSE ( ProfileShort profile)

Definition at line 542 of file DynProgr_sse_short.c.

Referenced by main().