swps3
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Routines for reading matrix files and converting matrices. More...
#include "swps3.h"
#include "matrix.h"
#include <stdio.h>
#include <stdlib.h>
#include <ctype.h>
#include <string.h>
#include "debug.h"
#include <sys/types.h>
#include <math.h>
Go to the source code of this file.
Functions | |
static char * | skip (char *line) |
EXPORT SBMatrix | swps3_convertMatrixD2B (double factor) |
EXPORT double | swps3_factorFromThreshold (double threshold, double singleGapCost) |
EXPORT DMatrix | swps3_readDMatrix (char *filename) |
EXPORT SBMatrix | swps3_readSBMatrix (char *filename) |
Variables | |
static int8_t sbmatrix[MATRIX_DIM][MATRIX_DIM] | __ALIGNED__ |
Routines for reading matrix files and converting matrices.
Definition in file matrix.c.
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static |
Definition at line 40 of file matrix.c.
Referenced by swps3_readDMatrix(), and swps3_readSBMatrix().
Definition at line 146 of file matrix.c.
References MATRIX_DIM.
EXPORT double swps3_factorFromThreshold | ( | double | threshold, |
double | singleGapCost | ||
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