swps3
|
Scalar alignment routine. More...
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Macros | |
#define | INFINITY (1.0/0.0) |
Functions | |
EXPORT double | swps3_alignScalar (const DMatrix matrix, const char *s1, int ls1, const char *s2, int ls2, Options *options) |
Scalar alignment routine.
Definition in file DynProgr_scalar.c.
#define INFINITY (1.0/0.0) |
Definition at line 35 of file DynProgr_scalar.c.
Referenced by swps3_alignScalar().
EXPORT double swps3_alignScalar | ( | const DMatrix | matrix, |
const char * | s1, | ||
int | ls1, | ||
const char * | s2, | ||
int | ls2, | ||
Options * | options | ||
) |
Definition at line 36 of file DynProgr_scalar.c.
References Options::gapExt, Options::gapOpen, INFINITY, ls1, ls2, MATRIX_DIM, MAX_SEQ_LENGTH, and Options::threshold.
Referenced by main(), swps3_alignmentByteSPE(), swps3_alignmentFloatSPE(), and swps3_alignmentShortSPE().