https://lab.dessimoz.org/teaching/rqb/ 2026-05-01T13:06:52+00:00 https://lab.dessimoz.org/teaching/rqb/ https://lab.dessimoz.org/teaching/rqb/_media/wiki/dokuwiki-128.png text/html 2022-10-20T08:25:54+00:00 Anonymous (anonymous@undisclosed.example.com) https://lab.dessimoz.org/teaching/rqb/course_details?rev=1666254354&do=diff Course Details and Policy Objectives At the conclusion of this course, participants should be able to: * recognise current topics and questions in computational biology * identify relevant scientific publications from citations and electronic databases text/html 2015-08-23T13:57:26+00:00 Anonymous (anonymous@undisclosed.example.com) https://lab.dessimoz.org/teaching/rqb/dokuwiki?rev=1440338246&do=diff DokuWiki wiki:dokuwiki DokuWiki is a simple to use and highly versatile Open Source wiki software that doesn't require a database. It is loved by users for its clean and readable syntax. The ease of maintenance, backup and integration makes it an administrator's favorite. Built in text/html 2018-11-01T16:34:01+00:00 Anonymous (anonymous@undisclosed.example.com) https://lab.dessimoz.org/teaching/rqb/guidelines_for_guest_lecturers?rev=1541090041&do=diff Guidelines for Guest Lecturers On this page, we provide guidelines for the guest lecturers. Of course, feel free to contact us directly for any other question you might have. Choice of Topic A good subject for this class is one that * is related to quantitative biology text/html 2025-11-05T17:11:17+00:00 Anonymous (anonymous@undisclosed.example.com) https://lab.dessimoz.org/teaching/rqb/home?rev=1762362677&do=diff The aim of this course is to develop two critical skills for research: the ability to identify relevant questions from the scientific literature and effective scientific writing. In addition, it introduces students to the process of publishing and peer reviewing of manuscripts. Every week, the course reviews a current research topic in quantitative biology. Each student will write one review, and provide two reports on colleagues' written work. text/html 2022-10-20T09:45:18+00:00 Anonymous (anonymous@undisclosed.example.com) https://lab.dessimoz.org/teaching/rqb/instructions_for_authors?rev=1666259118&do=diff Instructions for authors This page provides instructions for authors. Overview In this course, the writing process is structured into three successive stages and associated deadlines: * Write an “extended” outline. The outline is due on the Monday following the presentation. We will discuss it during the consultation hours. Usually, the extended outline has 4-levels: title, sections, subsections, paragraphs. text/html 2018-10-23T11:26:59+00:00 Anonymous (anonymous@undisclosed.example.com) https://lab.dessimoz.org/teaching/rqb/instructions_for_editor?rev=1540294019&do=diff Instructions for editor Assigning peer-reviewers * Avoid assigning the topic to students currently assigned on other tasks (e.g. writing, revising) * Double-check that the referee is not a co-author!! * On average, twice as many peer-reviewers as there are authors text/html 2018-10-23T11:26:59+00:00 Anonymous (anonymous@undisclosed.example.com) https://lab.dessimoz.org/teaching/rqb/instructions_for_referees?rev=1540294019&do=diff Instructions for Referees Consider the following questions when writing your report: * Assess significance * Is the topic addressed important/interesting? (Does the review say why?) * How original is the review? 
(compared with existing reviews of field?) text/html 2022-10-20T10:02:00+00:00 Anonymous (anonymous@undisclosed.example.com) https://lab.dessimoz.org/teaching/rqb/resources?rev=1666260120&do=diff Resources On Writing Articles, Presentations * Gopen and Swan, The Science of Scientific Writing, 1990 * Simon P Jones, How to write a good research paper, 2004 * Jim Garrett, Writing Effective Sentences * U Wisconsin Writing Center, How to Write Clear, Concise, and Direct Sentences On Plagiarism * UNIL Actions for the prevention of plagiarism, 2020 * UNIL policy on plagiarism, 2022 On Authorship Policy * CAM Good research practice * Genome Biology authorship guidelines … text/html 2018-12-07T12:23:39+00:00 Anonymous (anonymous@undisclosed.example.com) https://lab.dessimoz.org/teaching/rqb/schedule_2018?rev=1544185419&do=diff Friday Schedule Location: Genopode 2019-1 Week Date 11:00-12.00 12:00-13:00 Other files / links Assigned Student(s) 1st 2 Nov [Introduction] & [Review Writing] [Review on phylometagenomics] (web version) Özel, Rama, Rossier, Ruzzante, Vessman 2nd 9 Nov [Review on single-cell transcriptomics] by David Gfeller (DOF) [Peer-reviewing] Bouvet, Atta Ur, Fernandez, Li text/html 2019-11-22T14:57:31+00:00 Anonymous (anonymous@undisclosed.example.com) https://lab.dessimoz.org/teaching/rqb/schedule_2019?rev=1574434651&do=diff Friday Schedule Location: Genopode Room 2016 Week Date 11:00-12.00 12:00-13:00 Other files / links Assigned Student(s) 1st 1 Nov [Introduction] & [Review Writing] Dr. David Emms (Oxford): [Wikipedia page on Orthologs] Bibliography Romain Feron, Gilles Baud, Joaquim Cruz, Nermine Laaboob, Emmanuel Längst text/html 2020-11-27T10:20:47+00:00 Anonymous (anonymous@undisclosed.example.com) https://lab.dessimoz.org/teaching/rqb/schedule_2020?rev=1606472447&do=diff Friday Schedule Location: Remote (Zoom calls) Week Date 11:00-12.00 12:00-13:00 Other files / links Assigned Student(s) 1st 6 Nov [Introduction] & [Review Writing] Dr. Natasha Glover (SIB): [In Comparative Genomics, All Roads Lead to HOGs] TBA Cobb, Micheli, Sarton-Loheac, GhaziSoltani 2nd 13 Nov [Prof. Olivier Delaneau (DBC): Copying models for population and disease genetics] text/html 2021-11-19T14:49:41+00:00 Anonymous (anonymous@undisclosed.example.com) https://lab.dessimoz.org/teaching/rqb/schedule_2021?rev=1637333381&do=diff Friday Schedule Location: Genopode Auditorium C (or <https://unil.zoom.us/j/92135685603>) Week Date 11:00-12.00 12:00-13:00 Other files / links Assigned Student(s) 1st 5 Nov [Introduction] & [Review Writing] [Dr. Serge Pelet: Image analysis: from algorithms to artificial intelligence] .. Maxime Batsch, Lieb Guillaume, Ludovica Romanin, Daniel Tadros, Valentin Zufferey text/html 2022-11-25T14:54:54+00:00 Anonymous (anonymous@undisclosed.example.com) https://lab.dessimoz.org/teaching/rqb/schedule_2022?rev=1669388094&do=diff RQB 2022 Friday Schedule Location: see table below (or <https://unil.zoom.us/my/natashaglover>) Week Date Location 11:00-12.00 12:00-13:00 Other files / links Assigned Student(s) 1st 04 Nov Génopode C Introduction & How to write a review Dr. Josquin Daron (Université de Montpellier): Transposable elements and population genetics in mosquitos text/html 2023-11-24T15:48:51+00:00 Anonymous (anonymous@undisclosed.example.com) https://lab.dessimoz.org/teaching/rqb/schedule_2023?rev=1700840931&do=diff RQB 2023 Schedule Location: see table below (or <https://unil.zoom.us/my/natashaglover>) Week Date Location 11:00-12.00 12:00-13:00 1st 02 Nov Génopode 2016 Dr. Diego Hartasanchez Frenk (UNIL): PRDM9, what is it that you do? Introduction 1st 03 Nov Génopode 2016 Dr. David Moi (UNIL): Ecological networks and metagenomics Dr. Narjes Yousefi (University of Zurich): text/html 2025-01-09T15:47:00+00:00 Anonymous (anonymous@undisclosed.example.com) https://lab.dessimoz.org/teaching/rqb/schedule_2024?rev=1736437620&do=diff RQB 2024 Schedule Location: Genopode Auditorium C Date: 22 November 2024 9am-4pm Time Lecturer Presentation Files 9h CD [Introduction] 9h10 Prof. Sonja Lehtinen [The fitness cost of antibiotic resistance from observational data] 10h05 break 10h20 Prof. Santiago Carmona [What is a cell type? Conceptual and quantitative definitions of cell type in the single-cell omics era] [bibliography] 11h15 break text/html 2025-11-21T10:57:55+00:00 Anonymous (anonymous@undisclosed.example.com) https://lab.dessimoz.org/teaching/rqb/schedule_2025?rev=1763722675&do=diff RQB 2025 Schedule Location: Genopode Auditorium C Date: 21 November 2025 9am-4pm Time Lecturer Presentation Files 9h CD [Introduction] 9h10 Dr. Dongwook Kim, UNIL [Benchmarking multiple sequence alignments and phylogenetic trees in the age of AI-driven protein structures] [bibliography] 10h05 break 10h20 Prof. Florent Mazel, UNIL text/html 2015-08-23T13:57:26+00:00 Anonymous (anonymous@undisclosed.example.com) https://lab.dessimoz.org/teaching/rqb/syntax?rev=1440338246&do=diff Formatting Syntax DokuWiki supports some simple markup language, which tries to make the datafiles to be as readable as possible. This page contains all possible syntax you may use when editing the pages. Simply have a look at the source of this page by pressing text/html 2015-08-23T13:57:26+00:00 Anonymous (anonymous@undisclosed.example.com) https://lab.dessimoz.org/teaching/rqb/welcome?rev=1440338246&do=diff Welcome to your new DokuWiki Congratulations, your wiki is now up and running. Here are a few more tips to get you started. Enjoy your work with DokuWiki, -- the developers Create your first pages Your wiki needs to have a start page. As long as it doesn't exist, this link will be red: