fasta.c File Reference

Routines for reading FASTA databases. More...

#include "fasta.h"
#include "swps3.h"
#include "debug.h"
#include <stdlib.h>
#include <string.h>
#include <errno.h>

Include dependency graph for fasta.c:

Go to the source code of this file.

Functions
EXPORT void	swps3_closeLib (FastaLib *lib)
EXPORT char *	swps3_getSequenceName (FastaLib *lib)
EXPORT FastaLib *	swps3_openLib (char *filename)
EXPORT char *	swps3_readNextSequence (FastaLib *lib, int *len)
EXPORT void	swps3_translateSequence (char *sequence, int seqLen, char table[256])

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Detailed Description

Routines for reading FASTA databases.

Definition in file fasta.c.

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Function Documentation

EXPORT void swps3_closeLib

(

FastaLib *

lib

)

Definition at line 97 of file fasta.c.

Referenced by main().

EXPORT char* swps3_getSequenceName

(

FastaLib *

lib

)

Definition at line 94 of file fasta.c.

References FastaLib::name.

Referenced by main().

EXPORT FastaLib* swps3_openLib

(

char *

filename

)

Definition at line 40 of file fasta.c.

References error(), FastaLib::fp, FastaLib::name, and swps3_readNextSequence().

Referenced by main().

EXPORT char* swps3_readNextSequence	(	FastaLib *	lib,
		int *	len
	)

Definition at line 61 of file fasta.c.

References FastaLib::data, error(), FastaLib::fp, FastaLib::name, swps3_translateSequence(), and warning().

Referenced by main(), and swps3_openLib().

EXPORT void swps3_translateSequence	(	char *	sequence,
		int	seqLen,
		char	table[256]
	)

Definition at line 100 of file fasta.c.

References error(), and MATRIX_DIM.

Referenced by swps3_readNextSequence().

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