swps3 File List

Here is a list of all files with brief descriptions:

dblen.c [code]
debug.c [code]	Routines for error reporting
debug.h [code]	Routines for error reporting
DynProgr_altivec.cc [code]	Profile generation and alignment on IBM Altivec^TM instruction set
DynProgr_altivec.h [code]	Profile generation and alignment on IBM Altivec^TM instruction set
DynProgr_PPU.c [code]	PPU frontend to the alignment routines on the SPU
DynProgr_PPU.h [code]	PPU frontend to the alignment routines on the SPU
DynProgr_PPU_profile.inc [code]
DynProgr_scalar.c [code]	Scalar alignment routine
DynProgr_scalar.h [code]	Scalar platform independent alignment routine
DynProgr_SPE.h [code]	Definitions for message handling and memory management on the SPE
DynProgr_SPE_functions.cc [code]	Profile generation and alignment on Cell/BE SPE
DynProgr_SPE_functions.h [code]	Profile generation and alignment on Cell/BE SPE
DynProgr_SPE_main.c [code]	Main routine and message handling on the SPE
DynProgr_sse_byte.c [code]	Profile generation and alignment for packed byte vectors on SSE2
DynProgr_sse_byte.h [code]	Profile generation and alignment for packed byte vectors on SSE2
DynProgr_sse_short.c [code]	Profile generation and alignment for packed short vectors on SSE2
DynProgr_sse_short.h [code]	Profile generation and alignment for packed short vectors on SSE2
fasta.c [code]	Routines for reading FASTA databases
fasta.h [code]	Routines for reading FASTA databases
matrix.c [code]	Routines for reading matrix files and converting matrices
matrix.h [code]	Routines for reading matrix files and converting matrices
swps3.c [code]	Main procedure and multi-threading code
swps3.h [code]

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