matrix.h File Reference

Routines for reading matrix files and converting matrices. More...

#include "swps3.h"
#include <sys/types.h>

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Typedefs
typedef double *	DMatrix
typedef int8_t *	SBMatrix
Functions
SBMatrix	swps3_convertMatrixD2SB (double factor)
double	swps3_factorFromThreshold (double threshold, double singleGapCost)
DMatrix	swps3_readDMatrix (char *filename)
SBMatrix	swps3_readSBMatrix (char *filename)

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Detailed Description

Routines for reading matrix files and converting matrices.

Definition in file matrix.h.

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Typedef Documentation

typedef double* DMatrix

Definition at line 37 of file matrix.h.

typedef int8_t* SBMatrix

Definition at line 36 of file matrix.h.

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Function Documentation

SBMatrix swps3_convertMatrixD2SB

(

double

factor

)

double swps3_factorFromThreshold	(	double	threshold,
		double	singleGapCost
	)

Definition at line 160 of file matrix.c.

DMatrix swps3_readDMatrix

(

char *

filename

)

Definition at line 48 of file matrix.c.

References error(), and skip().

SBMatrix swps3_readSBMatrix

(

char *

filename

)

Definition at line 97 of file matrix.c.

References error(), and skip().

Referenced by main().

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