Options Struct Reference

#include <swps3.h>

List of all members.

Public Attributes
double	gapExt
	gap extension penalty
double	gapOpen
	gap initiation penalty
double	threshold
	maximum score

---

Detailed Description

Definition at line 52 of file swps3.h.

---

Member Data Documentation

double Options::gapExt

gap extension penalty

Definition at line 54 of file swps3.h.

Referenced by dynProgrLocal(), dynProgrLocal2(), main(), swps3_alignmentByteSSE(), swps3_alignmentShort2SSE(), swps3_alignmentShortSSE(), and swps3_alignScalar().

double Options::gapOpen

gap initiation penalty

Definition at line 53 of file swps3.h.

Referenced by dynProgrLocal(), dynProgrLocal2(), main(), swps3_alignmentByteSSE(), swps3_alignmentShort2SSE(), swps3_alignmentShortSSE(), and swps3_alignScalar().

double Options::threshold

maximum score

Definition at line 55 of file swps3.h.

Referenced by main(), and swps3_alignScalar().

---

The documentation for this struct was generated from the following file:

• swps3.h

---