Author: Christophe Dessimoz •
We have published our latest review, on methods to infer horizontal gene transfer, in Wikipedia. It was peer-reviewed and it simultaneously appeared in PLOS Computational Biology. After our review on approximate Bayesian computations published two years ago, this is our second contribution using an exciting new format called “Topic Page”. In this post, I reflect on our motivation and experience as Topic Page authors.
The difficult relationship between academia and Wikipedia
Academia has mixed feelings about Wikipedia. Although many academics—and certainly many students—consult Wikipedia frequently, I’d venture to say that most remain reluctant to cite Wikipedia or admit relying on it otherwise.
As for academics contributing to Wikipedia, things are even worse. As a result, the quality of Wikipedia articles on scientific topics is often quite poor.
I think there are two main reasons for this reluctance to contribute. First, the lack of clear authorship and therefore credit makes it difficult for scientists to get recognition for contributing to Wikipedia. Given the intense competitiveness of contemporary science, this is more than a vanity issue; recognition is tightly coupled with funding and job success—i.e. survival in the profession. But perhaps just as importantly, many scientists are unfamiliar with Wikipedia’s conventions and practices and are thus (rightly!) concerned that their contributions might be “diluted” by further edits by others or even flat out turned down. I know of several disgruntled people who have given up on editing Wikipedia because of such bad experiences.
Simson Garfinkel provides an illuminating account of this sort of tensions in this article:
“I have attempted to retire from directing films in the alternative universe
that is the Wikipedia a number of times, but somebody always overrules me,”
Lanier wrote. “Every time my Wikipedia entry is corrected, within a day I’m
turned into a film director again.”
Since Lanier’s attempted edits to his own Wikipedia entry were based on
firsthand knowledge of his own career, he was in direct violation of
Wikipedia’s three core policies. He has a point of view; he was writing on
the basis of his own original research; and what he wrote couldn’t be
verified by following a link to some kind of legitimate, authoritative, and
For the tertiary source Wikipedia aims to be, these core policies are entirely reasonable but it’s easy to imagine situation where they might frustrate some contributors.
Wikipedia’s tremendous impact
It’s however worth considering the upsides of contributing to Wikipedia. For all the obsessions many of us have about publishing articles in generalist journals with broad readership, the lack of interest in Wikipedia feels like a missed opportunity. Consider the wikipedia page on
Phylogenetics. It was consulted
over 50,000 in the last 3
This is over twice as much as the median number of views of papers published
in, say, the 17 Oct 2013 issue of
Nature in a quarter of the time (as it
happens, this particular issue has “impact metrics” as its cover story…).
PLOS Topic Pages
Fortunately, the good folks at PLOS Computational Biology have worked out a great solution to this conundrum: the “Topic Page”. In short, authors contribute Wikipedia-style articles on topics not or only poorly covered in Wikipedia. These get peer-reviewed and published in the journal with attribution, a DOI, and all the bells and whistles that come with journal articles. But in addition, the page gets incorporated into Wikipedia, where it starts a new life.
This format solves the problem discussed above. Authors get credit for their work in a way that fits well to existing structures. There is a permanent record of the contribution, indexed in scholarly databases such as PubMed, Google Scholar, etc. The contribution benefits from additional feedback from the peer-review and editorial process. And, perhaps most importantly, the authors can relinquish control over their work—for better or worse—with the reassurance that an unadulterated version of their work will remain available no matter what.
Our experience publishing Topic Pages
So far, we have published two Topic Pages: one on Approximate Bayesian Computations (paper, peer-reviews, Wikipedia page) and one on inferring horizontal gene transfer (paper, peer-reviews, Wikipedia page).
We’ve been pleasantly surprised by the excellent reception of the ABC article. It has been viewed over 26,000 times on the PLOS site alone. It’s also consulted a few thousand times every month on Wikipedia.
Remarkably, since the article was publicly accessible while we were drafting it on the PLOS Topic Page wiki, it had already accumulated over 10,000 views even before publication (see counter at bottom of this page). It was also picked up by a prominent’s statistician’s blog.
But just as importantly, the editorial process itself was great. Editing the manuscript on the PLOS Topic Page wiki provided a natural environment for collaborative writing. The wiki-based, open peer-review process yielded constructive and timely reviews (we could start addressing referee reports as they rolled in!). Our editor Daniel Mietchen was helpfully hands-on and did a substantial number of edits directly on the manuscript itself.
The only caveat I can think of is that the neutral, factual, impersonal, intemporal style of Wikipedia articles is quite different from the type of review articles I am otherwise used to. This is definitely not the right outlet for opinion-type pieces!
On the other hand, this format is great for student work. In fact, both of our Topic Pages started as student assignment in my course Reviews in Computational Biology. That being said, although the course gave the initial impetus, in both cases extensive additional work (and the involvement of additional co-authors) was required to get them published.
What happened since?
As it’s been two years since we published the ABC review, we can start to discern some outcomes.
The Wikipedia version underwent 46 changes, all minor modifications or additions (typo corrections, additional links and “Wikifications”, additional entries in the list of relevant software packages, attempts to sneak in one’s own contributions, … the usual stuff).
It is also gratifying to see our work appearing as first hit in Google. Since the publication in early 2013, it’s already been cited over 50 times.
Way of the future
In conclusion, the Topic Page is a great format. I am surprised that only eight Topic Pages have been published thus far, but perhaps there is still a lack of awareness about the format. I hope that this blog post will inspire some readers to improve Wikipedia by contributing a Topic Page. We are certainly thinking of our Topic Page number three…
Ravenhall M, Škunca N, Lassalle F, & Dessimoz C (2015). Inferring horizontal gene transfer. PLoS computational biology, 11 (5) PMID: 26020646 doi:10.1371/journal.pcbi.1004095 link to Wikipedia page.
Sunnåker M, Busetto AG, Numminen E, Corander J, Foll M, & Dessimoz C (2013). Approximate Bayesian computation. PLoS computational biology, 9 (1) PMID: 23341757 doi:10.1371/journal.pcbi.1002803
link to Wikipedia page
If you enjoyed this post, you might want to check the other entries of our
series “story behind the paper”.