matrix.c File Reference

Routines for reading matrix files and converting matrices. More...

#include "swps3.h"
#include "matrix.h"
#include <stdio.h>
#include <stdlib.h>
#include <ctype.h>
#include <string.h>
#include "debug.h"
#include <sys/types.h>
#include <math.h>

Include dependency graph for matrix.c:

Go to the source code of this file.

Functions
static char *	skip (char *line)
EXPORT SBMatrix	swps3_convertMatrixD2B (double factor)
EXPORT double	swps3_factorFromThreshold (double threshold, double singleGapCost)
EXPORT DMatrix	swps3_readDMatrix (char *filename)
EXPORT SBMatrix	swps3_readSBMatrix (char *filename)
Variables
static int8_t sbmatrix[MATRIX_DIM][MATRIX_DIM]	__ALIGNED__

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Detailed Description

Routines for reading matrix files and converting matrices.

Definition in file matrix.c.

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Function Documentation

static char* skip

(

char *

line

)

[static]

Definition at line 40 of file matrix.c.

Referenced by swps3_readDMatrix(), and swps3_readSBMatrix().

EXPORT SBMatrix swps3_convertMatrixD2B

(

double

factor

)

Definition at line 146 of file matrix.c.

References MATRIX_DIM.

EXPORT double swps3_factorFromThreshold	(	double	threshold,
		double	singleGapCost
	)

Definition at line 160 of file matrix.c.

EXPORT DMatrix swps3_readDMatrix

(

char *

filename

)

Definition at line 48 of file matrix.c.

References error(), and skip().

EXPORT SBMatrix swps3_readSBMatrix

(

char *

filename

)

Definition at line 97 of file matrix.c.

References error(), and skip().

Referenced by main().

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Variable Documentation

double dmatrix [MATRIX_DIM][MATRIX_DIM] __ALIGNED__ [static]

Definition at line 45 of file matrix.c.

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