swps3.c File Reference

Main procedure and multi-threading code. More...

#include "swps3.h"
#include "matrix.h"
#include "fasta.h"
#include "DynProgr_scalar.h"
#include "DynProgr_sse_byte.h"
#include "DynProgr_sse_short.h"
#include "DynProgr_PPU.h"
#include <stdio.h>
#include <stdlib.h>
#include <sys/types.h>
#include <sys/wait.h>
#include <sys/select.h>
#include <unistd.h>
#include <string.h>
#include <assert.h>
#include <float.h>

Include dependency graph for swps3.c:

Go to the source code of this file.

Functions
int	main (int argc, char *argv[])
static ssize_t	read_all (int fd, void *buf, size_t len)
static ssize_t	write_all (int fd, const void *data, size_t len)

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Detailed Description

Main procedure and multi-threading code.

Definition in file swps3.c.

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Function Documentation

int main	(	int	argc,
		char *	argv[]
	)

Definition at line 88 of file swps3.c.

References __ALIGNED__, ALTIVEC, Options::gapExt, Options::gapOpen, MATRIX_DIM, MAX_SEQ_LENGTH, MAX_SEQ_NAME_LENGTH, PS3, read_all(), SCALAR, SSE2, swps3_alignmentByteSPE(), swps3_alignmentByteSSE(), swps3_alignmentProfileSPE(), swps3_alignmentShortSPE(), swps3_alignmentShortSSE(), swps3_alignScalar(), swps3_closeLib(), swps3_createProfileByteAltivec(), swps3_createProfileBytePPU(), swps3_createProfileByteSSE(), swps3_createProfileFloatAltivec(), swps3_createProfileFloatPPU(), swps3_createProfileShortAltivec(), swps3_createProfileShortPPU(), swps3_createProfileShortSSE(), swps3_dynProgrByteAltivec(), swps3_dynProgrFloatAltivec(), swps3_dynProgrShortAltivec(), swps3_freeProfileByteSSE(), swps3_freeProfilePPU(), swps3_freeProfileShortSSE(), swps3_getSequenceName(), swps3_loadProfileByte(), swps3_loadProfileShort(), swps3_openLib(), swps3_readNextSequence(), swps3_readSBMatrix(), Options::threshold, and write_all().

static ssize_t read_all	(	int	fd,
		void *	buf,
		size_t	len
	)			[static]

Definition at line 71 of file swps3.c.

Referenced by main().

static ssize_t write_all	(	int	fd,
		const void *	data,
		size_t	len
	)			[static]

Definition at line 54 of file swps3.c.

Referenced by main().

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