00001 00005 /* 00006 * Copyright (c) 2007-2008 ETH Zürich, Institute of Computational Science 00007 * 00008 * Permission is hereby granted, free of charge, to any person 00009 * obtaining a copy of this software and associated documentation 00010 * files (the "Software"), to deal in the Software without 00011 * restriction, including without limitation the rights to use, 00012 * copy, modify, merge, publish, distribute, sublicense, and/or sell 00013 * copies of the Software, and to permit persons to whom the 00014 * Software is furnished to do so, subject to the following 00015 * conditions: 00016 * 00017 * The above copyright notice and this permission notice shall be 00018 * included in all copies or substantial portions of the Software. 00019 * 00020 * THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, 00021 * EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES 00022 * OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND 00023 * NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT 00024 * HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, 00025 * WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING 00026 * FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR 00027 * OTHER DEALINGS IN THE SOFTWARE. 00028 */ 00029 00030 #ifndef SCALAR_H_ 00031 #define SCALAR_H_ 00032 00033 #include "swps3.h" 00034 00035 double swps3_alignScalar( const DMatrix matrix, const char *s1, int ls1, const char *s2, int ls2, Options *options); 00036 00037 #endif 00038