DynProgr_PPU.h File Reference

PPU frontend to the alignment routines on the SPU. More...

#include "swps3.h"
#include "matrix.h"
#include "DynProgr_SPE.h"

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Functions
double	swps3_alignmentByteSPE (const SBMatrix matrix, const char *query, int queryLen, const char *db, int dbLen, Options *options)
double	swps3_alignmentFloatSPE (const SBMatrix matrix, const char *query, int queryLen, const char *db, int dbLen, Options *options)
double	swps3_alignmentProfileSPE (const char *db, int dbLen)
	Profile must have been loaded before!
double	swps3_alignmentShortSPE (const SBMatrix matrix, const char *query, int queryLen, const char *db, int dbLen, Options *options)
SPEProfile *	swps3_createProfileBytePPU (const char *query, int queryLen, const SBMatrix matrix, int maxDbLen)
SPEProfile *	swps3_createProfileFloatPPU (const char *query, int queryLen, const SBMatrix matrix, int maxDbLen)
SPEProfile *	swps3_createProfileShortPPU (const char *query, int queryLen, const SBMatrix matrix, int maxDbLen)
void	swps3_freeProfilePPU (SPEProfile *profile)
void	swps3_loadProfileByte (SPEProfile *profile, int maxDbLen, Options *options)
void	swps3_loadProfileFloat (SPEProfile *profile, int maxDbLen, Options *options)
void	swps3_loadProfileShort (SPEProfile *profile, int maxDbLen, Options *options)

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Detailed Description

PPU frontend to the alignment routines on the SPU.

Definition in file DynProgr_PPU.h.

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Function Documentation

double swps3_alignmentByteSPE	(	const SBMatrix	matrix,
		const char *	query,
		int	queryLen,
		const char *	db,
		int	dbLen,
		Options *	options
	)

Definition at line 214 of file DynProgr_PPU.c.

Referenced by main().

double swps3_alignmentFloatSPE	(	const SBMatrix	matrix,
		const char *	query,
		int	queryLen,
		const char *	db,
		int	dbLen,
		Options *	options
	)

Definition at line 276 of file DynProgr_PPU.c.

double swps3_alignmentProfileSPE	(	const char *	db,
		int	dbLen
	)

Profile must have been loaded before!

Definition at line 311 of file DynProgr_PPU.c.

Referenced by main().

double swps3_alignmentShortSPE	(	const SBMatrix	matrix,
		const char *	query,
		int	queryLen,
		const char *	db,
		int	dbLen,
		Options *	options
	)

Definition at line 244 of file DynProgr_PPU.c.

Referenced by main().

SPEProfile* swps3_createProfileBytePPU	(	const char *	query,
		int	queryLen,
		const SBMatrix	matrix,
		int	maxDbLen
	)

Definition at line 356 of file DynProgr_PPU.c.

Referenced by main().

SPEProfile* swps3_createProfileFloatPPU	(	const char *	query,
		int	queryLen,
		const SBMatrix	matrix,
		int	maxDbLen
	)

Definition at line 373 of file DynProgr_PPU.c.

Referenced by main().

SPEProfile* swps3_createProfileShortPPU	(	const char *	query,
		int	queryLen,
		const SBMatrix	matrix,
		int	maxDbLen
	)

Definition at line 366 of file DynProgr_PPU.c.

Referenced by main().

void swps3_freeProfilePPU

(

SPEProfile *

profile

)

Definition at line 379 of file DynProgr_PPU.c.

References SPEProfile::addr.

Referenced by main().

void swps3_loadProfileByte	(	SPEProfile *	profile,
		int	maxDbLen,
		Options *	options
	)

Definition at line 322 of file DynProgr_PPU.c.

Referenced by main().

void swps3_loadProfileFloat	(	SPEProfile *	profile,
		int	maxDbLen,
		Options *	options
	)

Definition at line 344 of file DynProgr_PPU.c.

void swps3_loadProfileShort	(	SPEProfile *	profile,
		int	maxDbLen,
		Options *	options
	)

Definition at line 333 of file DynProgr_PPU.c.

Referenced by main().

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