DynProgr_sse_byte.h File Reference

Profile generation and alignment for packed byte vectors on SSE2. More...

#include "swps3.h"
#include "matrix.h"
#include <xmmintrin.h>

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Classes
struct	ProfileByte
Functions
double	swps3_alignmentByteSSE (ProfileByte *query, const char *db, int dbLen, Options *options)
ProfileByte *	swps3_createProfileByteSSE (const char *query, int queryLen, SBMatrix matrix)
	Creates a profile with unsigned 8 bit integers.
void	swps3_freeProfileByteSSE (ProfileByte *profile)

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Detailed Description

Profile generation and alignment for packed byte vectors on SSE2.

Definition in file DynProgr_sse_byte.h.

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Function Documentation

double swps3_alignmentByteSSE	(	ProfileByte *	query,
		const char *	db,
		int	dbLen,
		Options *	options
	)

Definition at line 78 of file DynProgr_sse_byte.c.

References ProfileByte::bias, debug, Options::gapExt, Options::gapOpen, ProfileByte::len, LIKELY, ProfileByte::loadOpt, loadOpt, ProfileByte::profile, ProfileByte::rD, rD, ProfileByte::storeOpt, storeOpt, and UNLIKELY.

Referenced by main().

ProfileByte* swps3_createProfileByteSSE	(	const char *	query,
		int	queryLen,
		SBMatrix	matrix
	)

Creates a profile with unsigned 8 bit integers.

Definition at line 40 of file DynProgr_sse_byte.c.

References ProfileByte::bias, ProfileByte::data, debug, ProfileByte::len, ProfileByte::loadOpt, MATRIX_DIM, PAGE_ALIGN, ProfileByte::profile, profile, ProfileByte::rD, and ProfileByte::storeOpt.

Referenced by main().

void swps3_freeProfileByteSSE

(

ProfileByte *

profile

)

Definition at line 235 of file DynProgr_sse_byte.c.

Referenced by main().

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