swps3.h File Reference

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Classes
struct	Options
Defines
#define	__ALIGNED__   __attribute__((__aligned__(16)))
#define	EXPORT
#define	LIKELY(x)   (x)
#define	MATRIX_DIM   ('Z'-'A'+1)
#define	MAX_SEQ_LENGTH   (1024*10)
#define	MAX_SEQ_NAME_LENGTH   (255)
#define	UNLIKELY(x)   (x)
Enumerations
enum	SWType { SCALAR, SSE2, PS3, ALTIVEC }

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Define Documentation

#define __ALIGNED__   __attribute__((__aligned__(16)))

Definition at line 33 of file swps3.h.

#define EXPORT

Definition at line 42 of file swps3.h.

#define LIKELY

(

x

)

(x)

Definition at line 40 of file swps3.h.

Referenced by dynProgrLocal(), dynProgrLocal2(), dynProgrLocalBlock(), swps3_alignmentByteSSE(), swps3_alignmentShort2SSE(), and swps3_alignmentShortSSE().

#define MATRIX_DIM   ('Z'-'A'+1)

Definition at line 32 of file swps3.h.

Referenced by allocateProfile(), doCreateProfile(), handleCommand(), main(), swps3_alignScalar(), swps3_convertMatrixD2B(), swps3_createProfileAltivec(), swps3_createProfileByteSSE(), swps3_createProfileShortSSE(), swps3_translateSequence(), and TdynProgLocal().

#define MAX_SEQ_LENGTH   (1024*10)

Definition at line 30 of file swps3.h.

Referenced by main(), and swps3_alignScalar().

#define MAX_SEQ_NAME_LENGTH   (255)

Definition at line 31 of file swps3.h.

Referenced by main().

#define UNLIKELY

(

x

)

(x)

Definition at line 41 of file swps3.h.

Referenced by dynProgrLocal(), dynProgrLocal2(), dynProgrLocalBlock(), swps3_alignmentByteSSE(), swps3_alignmentShort2SSE(), and swps3_alignmentShortSSE().

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Enumeration Type Documentation

enum SWType

Enumerator:

SCALAR
SSE2
PS3
ALTIVEC

Definition at line 45 of file swps3.h.

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