DynProgr_scalar.h File Reference

Scalar platform independent alignment routine. More...

#include "swps3.h"

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Functions
double	swps3_alignScalar (const DMatrix matrix, const char *s1, int ls1, const char *s2, int ls2, Options *options)

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Detailed Description

Scalar platform independent alignment routine.

Definition in file DynProgr_scalar.h.

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Function Documentation

double swps3_alignScalar	(	const DMatrix	matrix,
		const char *	s1,
		int	ls1,
		const char *	s2,
		int	ls2,
		Options *	options
	)

Definition at line 36 of file DynProgr_scalar.c.

References Options::gapExt, Options::gapOpen, INFINITY, MATRIX_DIM, MAX_SEQ_LENGTH, and Options::threshold.

Referenced by main().

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